Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
284
gene expression
243
candidate regulatory elements
238
accessible chromatin
188
target gene predictions
chromatin state
94
differential activity
50
variant allelic effects
47
binding sites
33
histone modifications
5
eQTL
2
caQTL
Date released
300
February, 2021
235
September, 2022
160
September, 2023
128
November, 2021
76
February, 2024
38
March, 2023
35
August, 2021
34
May, 2021
33
June, 2020
27
May, 2020
20
January, 2021
18
January, 2020
15
November, 2022
12
February, 2023
10
February, 2020
9
March, 2020
7
April, 2020
7
October, 2022
6
August, 2018
5
October, 2019
4
March, 2024
2
May, 2022
1
January, 2022
1
July, 2020
1
November, 2019
Available data
795
bed bed3+
357
tsv
194
bigWig
90
txt
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
Organism
1184
Homo sapiens
Biosample type
794
primary cell
290
tissue
74
cell line
26
in vitro differentiated cells
Organ
896
epithelium
575
kidney
412
connective tissue
394
brain
301
musculature of body
260
pancreas
240
lung
233
vasculature
230
intestine
204
heart
194
limb
191
bodily fluid
187
embryo
182
blood
176
blood vessel
169
skin of body
139
liver
138
large intestine
113
extraembryonic component
100
eye
95
stomach
79
adipose tissue
79
uterus
74
bone element
72
mammary gland
67
artery
65
prostate gland
64
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
testis
21
nerve
19
lymphatic vessel
19
lymphoid tissue
19
ovary
19
thyroid gland
18
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
11
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
867
AMP
160
KPMP
128
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
798
hg19
202
GRCh38
annotation_type!
chromatin state
BIOSAMPLE
TYPE
1184 results
search-icon
table-tab-icon
Clear Filters
gene expression
candidate regulatory elements
accessible chromatin
target gene predictions
differential activity
variant allelic effects
binding sites
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
hepatocyte
13
1
8
3
2
1
4
epithelial cell of proximal tubule
16
2
1
1
1
1
glomerular endothelial cell
14
2
2
1
1
pancreatic ductal cell
3
6
3
3
1
1
2
+ See 154 more…
tissue
kidney
7
29
10
14
1
1
2
1
right kidney
20
1
10
1
renal cortex interstitium
20
1
9
1
renal pelvis
19
2
9
1
left kidney
18
9
+ See 29 more…
cell line
EndoC_BH1
8
8
1
3
1
HEK293
3
1
1
2
1
ACHN
2
1
1
Caki2
2
1
1
RCC 7860
2
1
1
+ See 17 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
foreskin keratinocyte
1
1
1
hepatocyte
2
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 5 more…
See all biosamples
Download