Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
206
candidate regulatory elements
152
target gene predictions
chromatin state
88
accessible chromatin
51
gene expression
33
differential activity
17
eQTL
14
binding sites
14
variant allelic effects
11
histone modifications
5
Fine-mapped variants
2
sQTL
2
variant to gene
Date released
217
September, 2022
130
February, 2021
47
March, 2023
39
May, 2021
36
November, 2021
28
February, 2024
20
January, 2021
13
June, 2020
11
March, 2020
8
August, 2021
7
August, 2018
6
January, 2022
6
May, 2020
6
October, 2019
4
January, 2020
4
October, 2022
3
April, 2020
3
March, 2024
2
February, 2020
2
November, 2019
1
February, 2023
1
January, 2018
1
June, 2021
Available data
485
bed bed3+
79
tsv
71
bigWig
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
csv
3
xls
Organism
595
Homo sapiens
Biosample type
322
tissue
166
primary cell
104
cell line
3
in vitro differentiated cells
Organ
896
epithelium
575
kidney
412
connective tissue
394
brain
301
musculature of body
260
pancreas
240
lung
233
vasculature
230
intestine
204
heart
194
limb
191
bodily fluid
187
embryo
182
blood
176
blood vessel
169
skin of body
139
liver
138
large intestine
113
extraembryonic component
100
eye
95
stomach
79
adipose tissue
79
uterus
74
bone element
72
mammary gland
67
artery
65
prostate gland
64
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
testis
21
nerve
19
lymphatic vessel
19
lymphoid tissue
19
ovary
19
thyroid gland
18
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
11
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
534
AMP
36
ENCODE
20
T1D
3
LungMap
2
community
Genome assembly (visualization)
499
hg19
68
GRCh38
annotation_type!
chromatin state
BIOSAMPLE
TYPE
595 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
gene expression
differential activity
eQTL
binding sites
variant allelic effects
histone modifications
Fine-mapped variants
sQTL
variant to gene
tissue
stomach
40
21
3
1
1
1
lung
33
17
1
1
islet of Langerhans
1
6
11
13
2
1
1
2
2
2
left lung
26
13
right lung
22
11
1
+ See 16 more…
primary cell
pancreatic ductal cell
3
6
3
3
1
1
2
pancreatic beta cell
3
8
3
3
1
pancreatic alpha cell
3
7
3
3
1
pancreatic acinar cell
3
6
3
3
1
pancreatic delta cell
4
5
3
3
1
+ See 23 more…
cell line
A549
21
19
1
2
1
EndoC_BH1
1
8
8
3
1
IMR-90
2
2
1
2
1
PC-9
2
2
1
1
1
WI38
5
1
+ See 9 more…
in vitro differentiated cells
pancreatic ductal cell
3
See all biosamples
Download