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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
gene expression
159
accessible chromatin
114
target gene predictions
89
differential activity
86
candidate regulatory elements
47
chromatin state
39
variant allelic effects
30
binding sites
17
histone modifications
2
caQTL
1
eQTL
Date released
133
September, 2022
127
November, 2021
79
February, 2021
62
September, 2023
50
February, 2024
27
March, 2023
20
January, 2021
15
June, 2020
13
January, 2020
13
May, 2020
11
August, 2021
9
May, 2021
7
April, 2020
6
October, 2022
5
October, 2019
3
August, 2017
2
May, 2022
1
February, 2023
1
March, 2020
Available data
445
bed bed3+
142
bigWig
89
tsv
44
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
584
Homo sapiens
Biosample type
584
primary cell
59
tissue
35
cell line
18
in vitro differentiated cells
Organ
584
epithelium
250
connective tissue
139
vasculature
120
kidney
102
pancreas
100
skin of body
95
blood vessel
46
mammary gland
44
liver
44
musculature of body
41
penis
40
extraembryonic component
35
brain
34
lung
27
heart
24
artery
23
eye
23
intestine
22
embryo
20
vein
16
bronchus
14
bone element
14
lymphatic vessel
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
2
ovary
1
limb
1
testis
1
thymus
Project
368
AMP
127
ENCODE
62
KPMP
20
T1D
7
LungMap
Genome assembly (visualization)
490
hg19
209
GRCh38
annotation_type!
gene expression
BIOSAMPLE
TYPE
584 results
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Clear Filters
accessible chromatin
target gene predictions
differential activity
candidate regulatory elements
chromatin state
variant allelic effects
binding sites
histone modifications
caQTL
eQTL
primary cell
endothelial cell
15
7
2
2
1
2
1
endothelial cell of umbilical vein
2
4
6
5
1
2
hepatocyte
8
3
1
1
2
1
4
foreskin keratinocyte
4
11
4
keratinocyte
2
5
3
3
1
1
2
pancreatic ductal cell
6
3
3
1
1
2
pancreatic beta cell
8
3
3
1
pancreatic alpha cell
7
3
3
1
mammary gland epithelial cell
1
4
3
3
1
1
pancreatic acinar cell
6
3
3
1
pancreatic delta cell
5
4
3
1
bronchial epithelial cell
1
2
4
2
2
1
endothelial cell of hepatic sinusoid
6
6
dermis blood vessel endothelial cell
2
6
2
mammary epithelial cell
1
1
3
1
4
retinal pigment epithelial cell
3
1
2
1
2
1
epithelial cell of prostate
3
4
2
kidney tubule cell
2
2
3
2
myoepithelial cell of mammary gland
2
4
2
choroid plexus epithelial cell
1
1
2
1
1
1
epithelial cell of proximal tubule
1
1
2
1
1
1
glomerular endothelial cell
2
1
2
1
1
kidney glomerular epithelial cell
2
1
2
1
1
luminal epithelial cell of mammary gland
2
3
1
1
pulmonary artery endothelial cell
1
1
2
1
1
1
renal cortical epithelial cell
2
1
2
1
1
type II pneumocyte
4
2
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
epithelial cell of esophagus
1
2
1
2
glomerular visceral epithelial cell
2
1
2
1
kidney epithelial cell
1
1
2
1
1
brain microvascular endothelial cell
1
1
2
1
iris pigment epithelial cell
1
1
2
1
kidney capillary endothelial cell
1
1
1
1
1
lung microvascular endothelial cell
1
3
1
non-pigmented ciliary epithelial cell
1
1
2
1
tracheal epithelial cell
1
2
2
aortic endothelial cell
2
1
1
endothelial cell of lymphatic vessel
3
1
mesothelial cell
2
1
1
pancreatic endothelial cell
1
3
pancreatic polypeptide-secreting cell
2
1
1
type I pneumocyte
3
1
club cell
2
1
endocardial cell
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
goblet cell
1
2
pancreatic A cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic gamma+epsilon cell
3
parietal cell
1
1
1
peptic cell
1
1
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
Connecting Tubule Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Glomerular Capillary Endothelial Cell
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Lymphatic Endothelial Cell
2
Medullary Thick Ascending Limb Cell
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Transitional Principal-Intercalated Cell
2
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
meso-epithelial cell
1
1
myoepithelial cell
1
1
non keratinizing barrier epithelial cell
1
1
paneth cell
1
1
respiratory goblet cell
1
1
small intestine goblet cell
1
1
stomach neuroendocrine cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Liver fetal (hepatocyte)
1
amniotic epithelial cell
1
bronchial goblet cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
gastric goblet cell
1
granulosa cell
1
intestinal epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
neuroendocrine cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
renal intercalated cell
1
renal principal cell
1
ureteric bud
1
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