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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1354
target gene predictions
977
histone modifications
817
binding sites
gene expression
385
accessible chromatin
171
eQTL
167
differential activity
136
variant allelic effects
75
chromatin state
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2399
February, 2021
1674
September, 2022
289
June, 2020
281
May, 2021
275
February, 2024
117
March, 2020
115
September, 2023
111
November, 2021
102
January, 2022
101
October, 2022
99
May, 2020
59
August, 2021
57
March, 2023
42
May, 2022
35
August, 2017
33
November, 2022
28
January, 2021
26
February, 2020
13
February, 2023
2
May, 2024
1
April, 2019
1
August, 2020
1
August, 2022
1
January, 2020
1
November, 2019
Available data
5923
bed bed3+
bed bed9
bigWig
260
tsv
40
bigBed bed9
34
bed bed9+
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
5860
Homo sapiens
Biosample type
2148
cell line
1938
tissue
1428
primary cell
344
in vitro differentiated cells
4
stem cell
Organ
479
epithelium
360
brain
338
kidney
315
connective tissue
277
musculature of body
231
lung
220
intestine
192
bodily fluid
183
blood
176
embryo
175
limb
172
vasculature
167
heart
163
skin of body
159
pancreas
136
large intestine
134
blood vessel
110
extraembryonic component
104
liver
89
stomach
76
uterus
70
mammary gland
64
prostate gland
63
adipose tissue
63
eye
63
small intestine
61
bone element
55
placenta
54
lymph node
54
penis
52
adrenal gland
51
artery
48
ureter
39
gonad
37
thymus
34
esophagus
34
spinal cord
26
spleen
21
testis
18
lymphoid tissue
17
nerve
17
ovary
17
thyroid gland
17
vein
14
mouth
13
lymphatic vessel
12
bronchus
12
pituitary gland
10
bone marrow
10
breast
7
skeleton
7
tongue
7
urinary bladder
7
vagina
5
trachea
3
nose
Project
5595
AMP
111
ENCODE
110
KPMP
32
T1D
11
community
5
ITG
Genome assembly (visualization)
5548
hg19
627
GRCh38
4
hg18
annotation_type!
gene expression
files.file_type!
bigWig
bed bed9
BIOSAMPLE
TYPE
5864 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
accessible chromatin
eQTL
differential activity
variant allelic effects
chromatin state
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
cell line
HeLa-S3
5
55
1
A549
21
19
1
2
1
H1-hESC
1
39
1
2
1
K562
7
23
1
2
1
1
MCF-7
9
6
2
3
1
+ See 761 more…
tissue
stomach
40
21
1
3
1
heart
37
20
1
1
2
2
brain
29
16
3
1
1
2
1
lung
33
17
1
muscle of arm
33
16
1
+ See 216 more…
primary cell
monocyte
2
86
1
2
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
1
common myeloid progenitor, CD34-positive
27
14
CD14-positive monocyte
8
19
B cell
14
10
+ See 349 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
1
3
4
embryonic stem cell
1
1
1
6
mesenchymal stem cell
3
3
1
1
1
+ See 102 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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