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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
484
accessible chromatin
478
gene expression
372
target gene predictions
328
candidate regulatory elements
histone modifications
chromatin state
152
differential activity
100
binding sites
81
variant allelic effects
46
eQTL
11
caQTL
hQTL
3
meQTL
3
sQTL
1
other
Date released
364
February, 2021
333
November, 2021
326
September, 2022
281
September, 2023
152
February, 2024
137
May, 2021
86
May, 2020
56
January, 2021
55
March, 2023
53
June, 2020
39
August, 2021
37
January, 2022
31
October, 2022
21
January, 2020
19
April, 2020
16
February, 2020
13
May, 2022
9
August, 2018
9
November, 2022
5
March, 2020
5
October, 2019
4
February, 2023
3
November, 2020
2
May, 2024
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1376
bed bed3+
591
tsv
410
bigWig
108
txt
16
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
2014
Homo sapiens
Biosample type
2059
primary cell
2052
tissue
1577
cell line
332
in vitro differentiated cells
3
stem cell
Organ
755
epithelium
300
kidney
244
connective tissue
149
vasculature
123
pancreas
99
blood vessel
78
skin of body
56
liver
44
musculature of body
37
mammary gland
33
penis
31
brain
30
extraembryonic component
29
lung
27
heart
24
artery
22
intestine
19
eye
17
embryo
15
lymphatic vessel
15
vein
13
bronchus
11
adrenal gland
11
stomach
9
bone element
9
bone marrow
9
esophagus
8
placenta
8
prostate gland
7
blood
7
bodily fluid
6
large intestine
4
gonad
4
small intestine
4
uterus
3
mouth
3
spinal cord
3
thyroid gland
3
trachea
2
ovary
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
1365
AMP
333
ENCODE
281
KPMP
59
T1D
19
LungMap
2
community
Genome assembly (visualization)
1391
hg19
455
GRCh38
annotation_type!
hQTL
histone modifications
chromatin state
BIOSAMPLE
TYPE
2059 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
candidate regulatory elements
differential activity
binding sites
variant allelic effects
eQTL
caQTL
meQTL
sQTL
other
primary cell
monocyte
18
15
2
1
4
1
1
common myeloid progenitor, CD34-positive
14
27
endothelial cell
15
9
7
2
2
1
2
B cell
6
2
10
14
fibroblast
16
4
1
6
2
hepatocyte
8
13
3
1
1
2
macrophage
12
2
3
3
7
1
CD14-positive monocyte
19
8
regulatory T cell
5
7
4
5
1
2
CD4-positive, alpha-beta memory T cell
9
14
epithelial cell of proximal tubule
1
16
1
2
1
1
pericyte cell
10
10
1
T-helper 1 cell
3
7
3
6
1
glomerular endothelial cell
2
14
1
2
1
smooth muscle cell
9
1
6
2
1
1
CD8-positive, alpha-beta T cell
4
3
5
7
T cell
6
4
4
2
2
T-helper 17 cell
2
7
3
5
1
pancreatic beta cell
8
3
3
3
1
natural killer cell
3
2
5
6
1
pancreatic alpha cell
7
3
3
3
1
pancreatic ductal cell
6
3
3
3
1
1
endothelial cell of hepatic sinusoid
6
4
6
pancreatic acinar cell
6
3
3
3
1
pancreatic delta cell
5
3
4
3
1
CD8-positive, alpha-beta memory T cell
7
8
astrocyte
8
1
4
2
endothelial cell of umbilical vein
2
4
6
2
1
foreskin keratinocyte
4
11
T-helper 2 cell
2
3
3
5
1
mononuclear cell
6
7
1
osteoblast
5
2
2
2
3
foreskin fibroblast
1
2
6
4
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
2
4
2
1
1
1
trophoblast cell
1
5
7
CD4-positive, alpha-beta T cell
1
3
8
excitatory neuron
12
fibroblast of lung
4
6
2
keratinocyte
2
5
3
1
1
skeletal muscle myoblast
2
1
2
4
2
1
neutrophil
3
4
2
1
1
skeletal muscle satellite cell
5
2
2
2
glomerular visceral epithelial cell
2
5
1
2
mammary gland epithelial cell
1
4
3
1
1
neurosphere
3
7
bronchial epithelial cell
1
2
4
2
erythroblast
5
2
2
fibroblast of cardiac tissue
2
4
3
fibroblast of dermis
4
4
1
mammary epithelial cell
1
1
3
4
memory B cell
4
3
2
naive thymus-derived CD8-positive, alpha-beta T cell
3
3
2
1
skeletal muscle fiber
5
2
2
dermis blood vessel endothelial cell
2
6
glutamatergic neuron
6
2
kidney tubule cell
2
1
2
3
pancreatic stellate cell
2
2
1
3
retinal pigment epithelial cell
3
1
2
2
cardiac muscle cell
1
1
2
1
2
epithelial cell of prostate
3
4
hepatic stellate cell
3
1
1
1
1
kidney glomerular epithelial cell
2
1
1
2
1
kidney interstitial cell
1
6
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
2
5
renal cortical epithelial cell
2
1
1
2
1
skin fibroblast
2
3
2
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
type II pneumocyte
4
2
1
T-cell
2
4
choroid plexus epithelial cell
1
1
2
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
enterocyte
3
3
fibroblast of breast
2
4
fibroblast of mammary gland
1
1
2
2
fibroblast of pulmonary artery
1
1
2
2
fibroblast of villous mesenchyme
1
1
2
2
gamma-delta T cell
2
4
kidney epithelial cell
1
1
1
2
1
luminal epithelial cell of mammary gland
2
3
1
mesenchymal stem cell
2
1
1
1
1
myoepithelial cell of mammary gland
2
4
naive B cell
3
1
2
naive T cell
3
3
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
2
2
1
1
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD1c-positive myeloid dendritic cell
1
1
2
1
CD4-positive helper T cell
1
2
2
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
T follicular helper cell
2
2
1
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
astrocyte of the cerebellum
1
1
2
1
astrocyte of the hippocampus
1
1
2
1
basal cell
2
1
2
central memory CD8-positive, alpha-beta T cell
2
3
effector memory CD8-positive, alpha-beta T cell
2
3
epithelial cell of esophagus
1
2
2
foreskin melanocyte
1
4
gabaergic neuron
3
2
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
1
4
kidney loop of Henle thick ascending limb epithelial cell
5
mast cell
1
1
1
1
1
myofibroblast cell
1
1
3
pancreatic endothelial cell
1
1
3
peripheral blood mononuclear cell
4
1
plasma cell
2
1
1
1
pulmonary artery endothelial cell
1
1
2
1
skeletal muscle cell
1
1
2
1
smooth muscle cell of the brain vasculature
1
1
2
1
activated CD4-positive, alpha-beta T cell
1
2
1
adipocyte
2
1
1
adult endothelial progenitor cell
3
1
blood vessel smooth muscle cell
2
2
brain microvascular endothelial cell
1
1
2
cardiac fibroblast
3
1
dermis lymphatic vessel endothelial cell
2
2
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of peridontal ligament
1
1
2
fibroblast of the aortic adventitia
1
2
1
iris pigment epithelial cell
1
1
2
kidney capillary endothelial cell
1
1
1
1
kidney connecting tubule epithelial cell
4
leukocyte
2
2
lung microvascular endothelial cell
1
3
mature natural killer cell
2
2
megakaryocyte
2
2
memory T cell
2
2
memory regulatory T cell
2
2
mesothelial cell
2
1
1
nephron progenitor
4
non-pigmented ciliary epithelial cell
1
1
2
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
smooth muscle cell of the esophagus
2
2
type I pneumocyte
3
1
vascular associated smooth muscle cell
2
2
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
1
2
activated CD8-positive, alpha-beta T cell
1
1
1
aortic adventitial fibroblast
1
2
aortic endothelial cell
2
1
astrocyte of the spinal cord
1
2
blood cell
3
brain pericyte
1
1
1
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
fibroblast of gingiva
1
2
fibroblast of the conjunctiva
1
2
glial cell
2
1
goblet cell
1
2
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
microglial cell
1
1
1
naive B cel
2
1
naive regulatory T cell
2
1
naive t cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic quiescent stellate cell
3
parietal cell
1
1
1
peptic cell
1
1
1
plasmacytoid dendritic cell
2
1
renal epithelial cell
1
2
schwann cell
2
1
smooth muscle cell of the coronary artery
1
1
1
stromal cell of bone marrow
1
2
thyroid follicular cell
1
1
1
tracheal epithelial cell
1
2
type B pancreatic cell
3
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Ishikawa
1
1
Kupffer cell
2
Muller cell
2
Th1 cell
1
1
Th17 cell
1
1
Th2 cell
1
1
acute myeloid leukemia cell
2
alternatively activated macrophage
1
1
alveolar macrophage
1
1
amnion mesenchymal stem cell
1
1
amniotic stem cell
1
1
articular chondrocyte
2
basal cell of epidermis
1
1
bone marrow cell
2
capillary endothelial cell
2
cardiac endothelial cell
1
1
cholangiocyte
1
1
colon goblet cell
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector memory CD4-positive, alpha-beta T cell
1
1
endothelial cell of coronary artery
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
epidermal melanocyte
1
1
epithelial cell of amnion
1
1
erythroid cell
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
inflammatory macrophage
1
1
intestinal tuft cell
1
1
kidney inner medulla collecting duct intercalated cell
2
luteal cell
1
1
mammary stem cell
1
1
mature NK T cell
1
1
melanocyte
1
1
meso-epithelial cell
1
1
mononuclear cell of bone marrow
2
myeloid dendritic cell
1
1
myoepithelial cell
1
1
myotube
2
natural killer cell mediated cytotoxicity
1
1
neoplastic cell
1
1
neural cell
1
1
neuron
2
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
paneth cell
1
1
peripheral blood stem cell
1
1
peripheral blood-derived erythroblast
2
preadipocyte
1
1
primordial germ cell
1
1
pulmonary interstitial fibroblast
1
1
regular atrial cardiac myocyte
1
1
regular cardiac myocyte
1
1
renal principal cell
1
1
renal vesicle
2
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small intestine goblet cell
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
ureteric bud
1
1
uterine smooth muscle cell
1
1
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Adipose stromal cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-lymphocyte
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Rhabdoid Tumor of the Kidney
1
Satellite Cells, Skeletal Muscle
1
activated pancreatic stellate cell
1
alpha-beta T cell
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac muscle myoblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
chromaffin cell of adrenal gland
1
chronic lymphocytic leukemia cell
1
ciliated epithelial cell
1
colorectal cancer
1
columnar chondrocyte
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
erythrocyte
1
erythroid lineage cell
1
erythroid progenitor cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulosa cell
1
head and neck squamous cell carcinoma
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
islet of Langerhans
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
leukemic stem cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature neutrophil
1
megakaryocyte-erythroid progenitor cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
neuroendocrine cell
1
neuronal stem cell
1
non-neuronal cell
1
pancreatic cell
1
pancreatic endocrine cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
pre-B acute lymphoblastic leukemia cell
1
progenitor cell
1
prostate gland cancer cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
renal proximal tubule cell
1
retinal bipolar neuron
1
sensory neuron
1
small cell ovarian carcinoma cell
1
somatic gonadal cell
1
somatic muscle myotube
1
sympathetic neuron
1
trophoblast giant cell
1
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