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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1357
target gene predictions
histone modifications
chromatin state
913
accessible chromatin
817
binding sites
gene expression
171
eQTL
167
differential activity
140
variant allelic effects
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
1672
September, 2022
1573
February, 2021
333
November, 2021
299
February, 2024
289
June, 2020
180
May, 2021
152
May, 2020
117
March, 2020
115
September, 2023
106
January, 2022
101
October, 2022
66
January, 2020
62
August, 2021
57
March, 2023
56
January, 2021
44
November, 2022
32
February, 2023
26
February, 2020
19
April, 2020
15
May, 2022
13
November, 2019
9
October, 2019
3
September, 2018
2
May, 2024
2
November, 2020
1
August, 2020
1
August, 2022
1
June, 2021
Available data
4907
bed bed3+
535
bigWig
260
tsv
16
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
5299
Homo sapiens
Biosample type
1942
tissue
1586
primary cell
1556
cell line
258
in vitro differentiated cells
3
stem cell
Organ
615
epithelium
367
kidney
338
connective tissue
327
brain
283
musculature of body
235
lung
219
intestine
206
pancreas
189
vasculature
187
limb
177
heart
166
embryo
165
bodily fluid
157
blood
154
skin of body
145
blood vessel
131
large intestine
108
extraembryonic component
101
liver
95
eye
92
stomach
75
uterus
67
mammary gland
65
adipose tissue
64
bone element
64
small intestine
58
adrenal gland
57
prostate gland
54
artery
54
placenta
51
ureter
50
lymph node
49
penis
39
gonad
37
thymus
36
esophagus
34
spinal cord
27
spleen
20
testis
19
nerve
18
ovary
18
thyroid gland
17
lymphoid tissue
16
vein
15
lymphatic vessel
15
skeleton
14
mouth
13
bronchus
11
pituitary gland
10
breast
9
bone marrow
7
tongue
7
urinary bladder
7
vagina
3
nose
3
trachea
Project
4809
AMP
333
ENCODE
110
KPMP
60
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
5032
hg19
888
GRCh38
4
hg18
annotation_type!
histone modifications
gene expression
chromatin state
BIOSAMPLE
TYPE
5347 results
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Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
binding sites
eQTL
differential activity
variant allelic effects
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
tissue
heart
37
20
5
1
2
stomach
40
21
3
1
kidney
29
14
10
1
1
1
brain
29
16
2
1
2
1
lung
33
17
1
+ See 194 more…
primary cell
common myeloid progenitor, CD34-positive
27
14
B cell
14
10
6
endothelial cell
7
15
2
1
2
2
fibroblast
4
16
1
2
6
monocyte
2
18
1
4
2
1
1
+ See 375 more…
cell line
HeLa-S3
5
55
1
A549
21
19
1
2
H1-hESC
1
39
1
2
K562
7
23
1
2
HFFc6
19
+ See 639 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
10
1
1
neural progenitor cell
5
5
10
adipocyte
4
6
4
1
embryonic stem cell
1
6
1
mesenchymal stem cell
3
3
1
1
+ See 82 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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