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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1357
target gene predictions
histone modifications
910
accessible chromatin
817
binding sites
683
gene expression
171
eQTL
167
differential activity
140
variant allelic effects
75
chromatin state
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
1750
February, 2021
1669
September, 2022
378
February, 2024
333
November, 2021
289
June, 2020
286
September, 2023
270
May, 2021
152
May, 2020
128
March, 2020
111
August, 2021
106
January, 2022
101
October, 2022
83
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
35
August, 2017
32
February, 2023
30
March, 2024
19
April, 2020
13
November, 2019
9
August, 2018
9
October, 2019
3
November, 2020
3
September, 2018
2
January, 2018
2
May, 2024
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
4947
bed bed3+
900
tsv
bed bed9
546
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
xls
Organism
6054
Homo sapiens
Biosample type
2094
primary cell
2077
tissue
1589
cell line
336
in vitro differentiated cells
4
stem cell
Organ
868
epithelium
569
kidney
394
connective tissue
352
brain
297
musculature of body
255
pancreas
237
lung
226
intestine
226
vasculature
203
heart
192
limb
177
embryo
171
blood vessel
168
bodily fluid
160
blood
157
skin of body
136
large intestine
128
liver
108
extraembryonic component
96
eye
95
stomach
80
adipose tissue
77
uterus
69
bone element
68
mammary gland
65
small intestine
62
artery
59
adrenal gland
58
prostate gland
54
placenta
51
ureter
50
lymph node
49
penis
41
gonad
38
esophagus
37
thymus
35
spinal cord
28
spleen
21
nerve
21
testis
19
ovary
19
thyroid gland
18
lymphatic vessel
18
lymphoid tissue
18
vein
15
mouth
15
skeleton
13
bronchus
12
pituitary gland
11
breast
10
bone marrow
8
tongue
8
urinary bladder
8
vagina
3
nose
3
trachea
1
pericardium
Project
5393
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
5116
hg19
902
GRCh38
4
hg18
annotation_type!
histone modifications
files.file_type!
xls
bed bed9
BIOSAMPLE
TYPE
6102 results
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Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
binding sites
gene expression
eQTL
differential activity
variant allelic effects
chromatin state
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
primary cell
monocyte
2
18
1
15
4
2
1
1
common myeloid progenitor, CD34-positive
27
14
endothelial cell
7
15
2
9
1
2
2
B cell
14
10
6
2
fibroblast
4
16
1
2
6
+ See 427 more…
tissue
heart
37
20
5
1
3
2
stomach
40
21
3
1
1
kidney
29
14
10
1
7
1
1
brain
29
16
2
1
1
2
1
lung
33
17
1
1
+ See 221 more…
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
2
8
A549
21
19
1
2
K562
7
23
1
2
1
EndoC_BH1
1
8
1
8
3
1
+ See 645 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
10
1
1
1
neural progenitor cell
5
5
10
7
adipocyte
4
6
4
1
1
4
cardiomyocytes
11
extended pluripotent stem (EPS) cells
9
+ See 97 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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