Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
target gene predictions
histone modifications
903
accessible chromatin
817
binding sites
124
variant allelic effects
40
chromatin state
13
caQTL
10
eQTL
3
hQTL
2
meQTL
2
other
2
pQTL
2
variant to gene
1
sQTL
Date released
1567
February, 2021
838
September, 2022
288
June, 2020
222
November, 2021
119
February, 2024
117
May, 2020
101
October, 2022
65
January, 2020
41
November, 2022
36
August, 2021
34
August, 2017
32
May, 2021
31
February, 2023
28
January, 2021
19
April, 2020
15
May, 2022
13
November, 2019
9
October, 2019
4
January, 2022
3
September, 2018
2
November, 2020
1
April, 2019
1
August, 2020
1
August, 2022
1
June, 2021
1
March, 2020
Available data
3590
bed bed3+
898
tsv
869
bed bed9
543
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
13
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
3544
Homo sapiens
Biosample type
1243
tissue
1142
cell line
1013
primary cell
189
in vitro differentiated cells
1
stem cell
Organ
397
epithelium
228
kidney
227
connective tissue
194
musculature of body
185
brain
157
lung
147
intestine
124
limb
124
vasculature
118
heart
109
pancreas
108
bodily fluid
108
skin of body
102
blood
92
blood vessel
88
large intestine
85
eye
83
embryo
71
extraembryonic component
66
liver
62
stomach
49
mammary gland
48
bone element
41
lymph node
41
prostate gland
41
small intestine
38
penis
38
ureter
36
adrenal gland
36
placenta
35
adipose tissue
33
artery
25
gonad
23
esophagus
23
thymus
20
spinal cord
18
spleen
16
uterus
14
testis
12
skeleton
12
vein
11
lymphoid tissue
11
nerve
11
thyroid gland
10
bronchus
10
lymphatic vessel
10
ovary
9
mouth
6
bone marrow
6
breast
5
tongue
4
urinary bladder
4
vagina
3
trachea
2
nose
Project
3316
AMP
222
ENCODE
32
T1D
19
LungMap
1
ITG
Genome assembly (visualization)
3582
hg19
410
GRCh38
1
hg18
annotation_type!
target gene predictions
histone modifications
BIOSAMPLE
TYPE
3590 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
accessible chromatin
binding sites
variant allelic effects
chromatin state
caQTL
eQTL
hQTL
meQTL
other
pQTL
variant to gene
sQTL
tissue
heart
37
5
1
2
stomach
40
3
kidney
29
10
1
1
1
muscle of arm
33
1
1
brain
29
2
1
1
+ See 167 more…
cell line
A549
21
1
2
MCF-7
9
1
3
K562
7
1
2
1
EndoC_BH1
8
1
1
breast cancer cell
9
+ See 628 more…
primary cell
common myeloid progenitor, CD34-positive
27
fibroblast
16
1
6
endothelial cell
15
2
2
2
1
monocyte
18
1
1
1
B cell
14
6
+ See 295 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
1
1
neural progenitor cell
5
10
adipocyte
4
4
1
4
embryonic stem cell
5
1
retinal pigment epithelial cell
6
+ See 71 more…
stem cell
H1-hESC
1
See all biosamples
Download