Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1659
candidate regulatory elements
target gene predictions
976
histone modifications
chromatin state
908
accessible chromatin
815
binding sites
682
gene expression
170
eQTL
167
differential activity
139
variant allelic effects
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2579
February, 2021
838
September, 2022
287
June, 2020
281
September, 2023
245
May, 2021
220
November, 2021
198
February, 2024
134
May, 2020
128
August, 2021
104
January, 2022
101
October, 2022
84
March, 2020
82
January, 2020
70
March, 2023
64
February, 2020
44
November, 2022
32
February, 2023
29
March, 2024
28
January, 2021
18
April, 2020
15
May, 2022
13
November, 2019
9
August, 2018
9
October, 2019
3
November, 2020
3
September, 2018
2
January, 2018
2
May, 2024
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
4505
bed bed3+
899
tsv
538
bigWig
108
txt
24
csv
13
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
5579
Homo sapiens
Biosample type
1890
primary cell
1762
cell line
1612
tissue
361
in vitro differentiated cells
Organ
774
epithelium
500
kidney
334
connective tissue
318
brain
221
musculature of body
216
pancreas
202
vasculature
162
lung
157
intestine
155
heart
151
blood vessel
145
limb
134
bodily fluid
127
blood
125
skin of body
118
liver
103
embryo
94
large intestine
91
eye
77
extraembryonic component
66
adipose tissue
65
stomach
59
artery
58
bone element
53
mammary gland
50
prostate gland
45
lymph node
43
penis
41
small intestine
40
placenta
38
adrenal gland
38
ureter
31
gonad
28
esophagus
26
spinal cord
24
thymus
21
uterus
20
spleen
18
nerve
18
testis
16
lymphatic vessel
14
vein
13
lymphoid tissue
13
thyroid gland
ovary
12
skeleton
bronchus
11
mouth
8
bone marrow
8
breast
6
tongue
6
vagina
5
trachea
5
urinary bladder
3
pituitary gland
2
nose
1
pericardium
Project
5060
AMP
281
KPMP
220
ENCODE
32
T1D
18
LungMap
11
community
5
ITG
Genome assembly (visualization)
4642
hg19
714
GRCh38
4
hg18
annotation_type!
target gene predictions
chromatin state
organ_slims!
bronchus
ovary
BIOSAMPLE
TYPE
5627 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
histone modifications
accessible chromatin
binding sites
gene expression
eQTL
differential activity
variant allelic effects
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
primary cell
monocyte
86
18
1
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
30
4
3
endothelial cell
1
15
2
9
1
2
2
hepatocyte
1
4
8
1
13
2
common myeloid progenitor, CD34-positive
27
+ See 433 more…
cell line
A549
21
1
1
2
EndoC_BH1
1
8
1
8
3
1
breast cancer cell
11
9
MCF-7
9
2
1
3
H1-hESC
1
1
1
2
8
+ See 755 more…
tissue
kidney
29
2
10
1
7
1
1
heart
37
1
5
1
3
2
stomach
40
1
3
1
1
islet of Langerhans
1
6
2
11
13
1
2
2
2
brain
29
3
2
1
1
2
1
+ See 254 more…
in vitro differentiated cells
neural progenitor cell
5
15
10
7
hematopoietic multipotent progenitor cell
19
1
1
1
1
adipocyte
4
1
4
1
1
cardiomyocytes
11
extended pluripotent stem (EPS) cells
9
+ See 113 more…
See all biosamples
Download