Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1611
candidate regulatory elements
1269
target gene predictions
973
histone modifications
892
accessible chromatin
813
binding sites
variant allelic effects
39
chromatin state
13
caQTL
10
eQTL
3
hQTL
2
meQTL
2
other
2
pQTL
2
variant to gene
1
sQTL
Date released
2369
February, 2021
1624
September, 2022
322
November, 2021
283
June, 2020
281
May, 2021
186
February, 2024
97
October, 2022
72
May, 2020
66
January, 2020
56
January, 2021
52
August, 2021
44
March, 2020
41
November, 2022
33
August, 2017
30
February, 2023
19
April, 2020
15
May, 2022
13
November, 2019
9
October, 2019
5
January, 2022
5
September, 2023
3
September, 2018
2
November, 2020
1
April, 2019
1
August, 2020
1
August, 2022
1
June, 2021
Available data
5632
bed bed3+
896
tsv
842
bed bed9
536
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
12
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
5587
Homo sapiens
Biosample type
2059
cell line
1722
tissue
1505
primary cell
341
in vitro differentiated cells
4
stem cell
Organ
509
epithelium
315
connective tissue
299
brain
298
kidney
274
musculature of body
238
lung
225
intestine
190
bodily fluid
181
blood
178
embryo
167
limb
164
skin of body
163
heart
150
vasculature
148
pancreas
137
large intestine
116
blood vessel
112
extraembryonic component
98
liver
96
eye
stomach
uterus
72
mammary gland
70
bone element
64
small intestine
62
prostate gland
56
adrenal gland
56
placenta
54
lymph node
54
penis
48
ureter
46
adipose tissue
42
artery
38
thymus
37
gonad
31
esophagus
29
spinal cord
26
spleen
19
testis
18
lymphoid tissue
17
ovary
17
vein
16
thyroid gland
15
skeleton
14
lymphatic vessel
13
bronchus
13
mouth
12
nerve
11
bone marrow
11
pituitary gland
9
breast
7
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
Project
5231
AMP
322
ENCODE
59
T1D
19
LungMap
1
ITG
Genome assembly (visualization)
5624
hg19
738
GRCh38
1
hg18
annotation_type!
variant allelic effects
organ_slims!
uterus
stomach
BIOSAMPLE
TYPE
5632 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
chromatin state
caQTL
eQTL
hQTL
meQTL
other
pQTL
variant to gene
sQTL
cell line
A549
21
19
1
1
2
H1-hESC
1
39
1
1
2
K562
7
23
1
1
2
1
MCF-7
9
6
2
1
3
breast cancer cell
11
9
+ See 757 more…
tissue
heart
37
20
1
5
1
kidney
29
14
2
10
1
1
brain
29
16
3
2
1
lung
33
17
muscle of arm
33
16
1
+ See 205 more…
primary cell
monocyte
2
86
18
1
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
common myeloid progenitor, CD34-positive
27
14
B cell
14
10
6
endothelial cell
7
1
15
2
2
1
+ See 311 more…
in vitro differentiated cells
neural progenitor cell
5
5
14
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
4
1
4
mesenchymal stem cell
3
3
1
1
1
T-cell acute lymphoblastic leukemia
5
3
+ See 101 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download