Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
116
candidate regulatory elements
101
target gene predictions
63
chromatin state
52
binding sites
30
histone modifications
22
accessible chromatin
4
eQTL
3
gene expression
1
pQTL
Date released
173
September, 2022
120
February, 2021
31
February, 2024
20
October, 2022
19
June, 2020
9
May, 2021
6
November, 2021
5
August, 2017
3
August, 2021
3
March, 2024
2
January, 2022
1
March, 2020
Available data
327
bed bed3+
58
bed bed9
3
bigWig
3
tsv
Organism
392
Homo sapiens
Biosample type
239
cell line
138
tissue
15
primary cell
Organ
908
epithelium
636
kidney
449
brain
442
connective tissue
368
musculature of body
310
lung
286
intestine
266
pancreas
251
vasculature
245
heart
236
limb
218
bodily fluid
215
embryo
207
blood
203
skin of body
195
blood vessel
174
large intestine
152
liver
146
extraembryonic component
117
stomach
107
eye
89
bone element
86
adipose tissue
86
mammary gland
84
small intestine
83
uterus
77
prostate gland
73
placenta
72
adrenal gland
71
artery
64
penis
62
lymph node
61
ureter
50
gonad
49
thymus
43
esophagus
43
spinal cord
34
spleen
26
testis
24
lymphoid tissue
23
nerve
23
ovary
22
thyroid gland
22
vein
21
lymphatic vessel
19
mouth
18
skeleton
15
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
386
AMP
6
ENCODE
Genome assembly (visualization)
387
hg19
96
GRCh38
annotation_type!
variant allelic effects
BIOSAMPLE
TYPE
392 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
binding sites
histone modifications
accessible chromatin
eQTL
gene expression
pQTL
cell line
K562
7
23
7
2
1
1
GM12878
2
8
2
2
1
1
GM06990
2
1
1
2
1
1
GM19240
1
2
1
2
1
1
HAP-1
2
2
1
1
1
1
+ See 34 more…
tissue
large intestine
27
14
13
1
1
sigmoid colon
10
7
5
1
transverse colon
8
5
4
1
1
colonic mucosa
4
2
3
1
mucosa of rectum
4
2
3
+ See 10 more…
primary cell
colon epithelial cell
3
3
peripheral blood mononuclear cell
4
1
1
peripheral blood stem cell
1
1
1
See all biosamples
Download