Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
253
gene expression
212
accessible chromatin
122
target gene predictions
candidate regulatory elements
92
differential activity
53
chromatin state
43
binding sites
variant allelic effects
28
histone modifications
3
eQTL
2
caQTL
Date released
155
September, 2023
143
February, 2021
127
November, 2021
103
September, 2022
50
February, 2024
38
March, 2023
34
May, 2021
25
June, 2020
23
August, 2021
20
January, 2021
15
November, 2022
14
January, 2020
12
February, 2023
9
February, 2020
7
April, 2020
6
August, 2018
6
March, 2020
6
October, 2022
5
October, 2019
3
August, 2017
2
March, 2024
2
May, 2022
1
July, 2020
1
May, 2020
1
November, 2019
Available data
409
bed bed3+
324
tsv
172
bigWig
78
txt
50
bed bed9
10
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
808
Homo sapiens
Biosample type
694
primary cell
50
tissue
40
cell line
24
in vitro differentiated cells
Organ
808
epithelium
477
kidney
362
connective tissue
338
brain
242
pancreas
222
musculature of body
201
vasculature
179
lung
175
heart
173
intestine
171
bodily fluid
164
blood
158
embryo
156
blood vessel
142
limb
129
liver
128
skin of body
105
large intestine
89
eye
87
extraembryonic component
74
uterus
67
adipose tissue
66
stomach
64
bone element
61
artery
58
mammary gland
50
prostate gland
47
small intestine
44
adrenal gland
44
placenta
41
lymph node
36
penis
33
gonad
30
ureter
29
thymus
27
spinal cord
26
esophagus
19
spleen
17
lymphatic vessel
17
nerve
17
testis
16
vein
15
lymphoid tissue
15
ovary
14
skeleton
14
thyroid gland
13
pituitary gland
11
bone marrow
11
bronchus
11
mouth
8
breast
7
urinary bladder
6
tongue
6
vagina
5
trachea
3
nose
1
pericardium
Project
497
AMP
155
KPMP
127
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
462
hg19
234
GRCh38
annotation_type!
variant allelic effects
candidate regulatory elements
BIOSAMPLE
TYPE
808 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
differential activity
chromatin state
binding sites
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
1
1
2
hepatocyte
13
8
3
1
1
4
epithelial cell of proximal tubule
16
1
1
1
1
glomerular endothelial cell
14
2
1
1
pancreatic ductal cell
3
6
3
3
1
2
+ See 138 more…
tissue
pigmented layer of retina
20
breast epithelium
1
3
2
esophagus squamous epithelium
1
2
2
kidney epithelium
1
1
pancreatic ductal cell
2
+ See 15 more…
cell line
EndoC_BH1
8
8
1
3
keratinocyte
3
1
choroid plexus epithelial cell
1
1
1
epithelial cell of prostate
1
1
1
colon epithelial cell
1
1
+ See 6 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
pancreatic ductal cell
3
+ See 4 more…
See all biosamples
Download