Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
484
accessible chromatin
gene expression
372
target gene predictions
328
candidate regulatory elements
210
histone modifications
197
chromatin state
152
differential activity
100
binding sites
81
variant allelic effects
46
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
333
November, 2021
166
September, 2022
63
May, 2020
59
May, 2021
56
January, 2021
53
June, 2020
37
February, 2024
21
January, 2020
19
April, 2020
13
August, 2021
13
May, 2022
9
November, 2022
5
October, 2019
3
February, 2021
2
January, 2022
2
November, 2020
1
June, 2021
1
March, 2020
Available data
853
bed bed3+
397
bigWig
12
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
811
Homo sapiens
Biosample type
856
primary cell
715
tissue
562
cell line
134
in vitro differentiated cells
3
stem cell
Organ
273
epithelium
112
connective tissue
61
pancreas
43
vasculature
33
skin of body
32
kidney
29
blood vessel
22
musculature of body
21
liver
19
intestine
17
lung
16
mammary gland
15
extraembryonic component
14
heart
13
brain
10
adrenal gland
10
eye
9
embryo
9
stomach
8
penis
7
artery
6
bronchus
6
large intestine
6
lymphatic vessel
6
vein
5
bone element
5
bone marrow
5
esophagus
4
placenta
4
small intestine
3
gonad
3
prostate gland
3
uterus
2
ovary
2
thyroid gland
1
blood
1
bodily fluid
1
limb
1
mouth
1
spinal cord
1
thymus
1
trachea
Project
447
AMP
333
ENCODE
57
T1D
19
LungMap
Genome assembly (visualization)
855
hg19
399
GRCh38
annotation_type!
gene expression
BIOSAMPLE
TYPE
856 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
primary cell
endothelial cell
15
7
fibroblast
16
4
monocyte
18
2
pericyte cell
10
10
CD14-positive monocyte
19
B cell
6
10
macrophage
12
3
smooth muscle cell
9
6
common myeloid progenitor, CD34-positive
14
astrocyte
8
4
excitatory neuron
12
hepatocyte
8
3
pancreatic beta cell
8
3
T cell
6
4
pancreatic alpha cell
7
3
CD4-positive, alpha-beta memory T cell
9
CD8-positive, alpha-beta T cell
4
5
pancreatic acinar cell
6
3
pancreatic delta cell
5
4
pancreatic ductal cell
6
3
regulatory T cell
5
4
glutamatergic neuron
6
2
natural killer cell
3
5
CD8-positive, alpha-beta memory T cell
7
erythroblast
5
2
keratinocyte
2
5
osteoblast
5
2
skeletal muscle satellite cell
5
2
T-helper 1 cell
3
3
colon epithelial cell
3
3
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
2
4
fibroblast of cardiac tissue
2
4
memory B cell
4
2
mononuclear cell
6
olfactory receptor cell
6
trophoblast cell
1
5
type II pneumocyte
4
2
T-helper 17 cell
2
3
T-helper 2 cell
2
3
cortical cell of adrenal gland
3
2
gabaergic neuron
3
2
inhibitory neuron
5
luminal epithelial cell of mammary gland
2
3
mammary gland epithelial cell
1
4
naive B cell
3
2
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
skeletal muscle fiber
5
skin fibroblast
2
3
CD4-positive, alpha-beta T cell
1
3
blood vessel smooth muscle cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
hepatic stellate cell
3
1
kidney tubule cell
2
2
megakaryocyte
2
2
retinal pigment epithelial cell
3
1
skeletal muscle myoblast
2
2
smooth muscle cell of the esophagus
2
2
type I muscle cell
3
1
type I pneumocyte
3
1
type II muscle cell
3
1
cardiac fibroblast
3
CD4-positive helper T cell
1
2
activated CD4-positive, alpha-beta T cell
1
2
basal cell
2
1
bronchial epithelial cell
1
2
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
enterocyte
3
epithelial cell of prostate
3
foreskin fibroblast
1
2
glomerular endothelial cell
2
1
glomerular visceral epithelial cell
2
1
kidney glomerular epithelial cell
2
1
mesothelial cell
2
1
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
neurosphere
3
neutrophil
3
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic polypeptide-secreting cell
2
1
pancreatic stellate cell
2
1
plasma cell
2
1
plasmacytoid dendritic cell
2
1
renal cortical epithelial cell
2
1
schwann cell
2
1
type B pancreatic cell
3
CD1c-positive myeloid dendritic cell
1
1
Muller cell
2
T follicular helper cell
2
T-cell
2
activated CD8-positive, alpha-beta T cell
1
1
acute myeloid leukemia cell
2
adipocyte
2
alveolar macrophage
1
1
aortic endothelial cell
2
astrocyte of the cerebellum
1
1
astrocyte of the hippocampus
1
1
basal cell of epidermis
1
1
bone marrow cell
2
brain microvascular endothelial cell
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle cell
1
1
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
1
1
colon goblet cell
1
1
conventional dendritic cell
1
1
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
epithelial cell of proximal tubule
1
1
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of mammary gland
1
1
fibroblast of peridontal ligament
1
1
fibroblast of pulmonary artery
1
1
fibroblast of villous mesenchyme
1
1
foveolar cell of stomach
1
1
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
1
1
intestinal tuft cell
1
1
iris pigment epithelial cell
1
1
kidney capillary endothelial cell
1
1
kidney epithelial cell
1
1
leukocyte
2
luteal cell
1
1
mammary epithelial cell
1
1
mast cell
1
1
mature NK T cell
1
1
mature natural killer cell
2
melanocyte
1
1
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
microglial cell
1
1
myoepithelial cell
1
1
myoepithelial cell of mammary gland
2
naive regulatory T cell
2
naive t cell
1
1
natural killer cell mediated cytotoxicity
1
1
neuron
2
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
non-pigmented ciliary epithelial cell
1
1
paneth cell
1
1
parietal cell
1
1
peptic cell
1
1
pulmonary artery endothelial cell
1
1
regular atrial cardiac myocyte
1
1
respiratory goblet cell
1
1
skeletal muscle cell
1
1
skeletal muscle fibroblast
1
1
small intestine goblet cell
1
1
smooth muscle cell of the brain vasculature
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
thyroid follicular cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
ventricular cardiac muscle cell
1
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-lymphocyte
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Ishikawa
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
aortic adventitial fibroblast
1
astrocyte of the spinal cord
1
brain pericyte
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
endothelial cell of artery
1
enteroendocrine cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
erythrocyte
1
erythroid cell
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of gingiva
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
foreskin melanocyte
1
gastric goblet cell
1
goblet cell
1
hepatoblast
1
immature natural killer cell
1
inflammatory macrophage
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lung microvascular endothelial cell
1
lung neuroendocrine cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary stem cell
1
megakaryocyte-erythroid progenitor cell
1
metanephros
1
microglial cell/astrocyte
1
myeloid dendritic cell
1
myofibroblast cell
1
neoplastic cell
1
neural cell
1
neuroendocrine cell
1
non-neuronal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal epithelial cell
1
peripheral blood stem cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
preadipocyte
1
primordial germ cell
1
proximal tubule cells with injury markers
1
pulmonary interstitial fibroblast
1
regular cardiac myocyte
1
renal epithelial cell
1
renal intercalated cell
1
renal principal cell
1
retinal bipolar neuron
1
smooth muscle cell of the coronary artery
1
somatic gonadal cell
1
stromal cell of bone marrow
1
sympathetic neuron
1
tracheal epithelial cell
1
trophoblast giant cell
1
ureteric bud
1
See all biosamples
Download