Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1585
candidate regulatory elements
1276
target gene predictions
952
histone modifications
892
chromatin state
822
accessible chromatin
786
binding sites
632
gene expression
153
differential activity
148
eQTL
122
variant allelic effects
65
Fine-mapped variants
11
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
1
pQTL
1
representative DNase hypersensitivity sites
Date released
268
June, 2020
190
November, 2021
55
January, 2020
54
May, 2020
43
February, 2024
37
November, 2022
30
August, 2021
27
January, 2021
26
May, 2021
25
February, 2023
16
April, 2020
11
May, 2022
11
November, 2019
10
February, 2021
8
October, 2019
6
September, 2022
4
January, 2022
1
September, 2018
Available data
812
bed bed3+
471
bigWig
8
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
777
Homo sapiens
Biosample type
422
primary cell
186
tissue
157
cell line
57
in vitro differentiated cells
Organ
212
epithelium
connective tissue
65
pancreas
59
eye
50
kidney
42
brain
36
vasculature
27
musculature of body
26
blood vessel
26
heart
24
liver
21
intestine
20
limb
15
bone element
15
lung
13
skin of body
12
blood
12
bodily fluid
12
embryo
11
artery
10
large intestine
9
extraembryonic component
8
lymph node
8
skeleton
8
stomach
7
adipose tissue
7
adrenal gland
7
mammary gland
5
gonad
5
prostate gland
4
esophagus
4
lymphatic vessel
4
placenta
4
ureter
3
bronchus
nerve
3
penis
3
small intestine
3
uterus
2
bone marrow
2
lymphoid tissue
2
ovary
2
spinal cord
2
spleen
2
testis
2
thymus
2
thyroid gland
2
vein
1
breast
1
mouth
1
nose
1
tongue
1
trachea
1
urinary bladder
Project
588
AMP
190
ENCODE
28
T1D
16
LungMap
Genome assembly (visualization)
814
hg19
342
GRCh38
organ_slims!
nerve
connective tissue
BIOSAMPLE
TYPE
822 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
primary cell
monocyte
18
endothelial cell
15
excitatory neuron
12
macrophage
12
smooth muscle cell
9
+ See 194 more…
tissue
retina
23
pigmented layer of retina
20
kidney
10
islet of Langerhans
6
heart
5
+ See 90 more…
cell line
EndoC_BH1
8
HepG2
2
Rh-4 cell
2
786-O cell
1
A-673 cell
1
+ See 143 more…
in vitro differentiated cells
neural progenitor cell
10
embryonic stem cell
6
retinal pigment epithelial cell
6
SGBS preadipocytes
4
B cell
2
+ See 26 more…
See all biosamples
Download