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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
484
accessible chromatin
478
gene expression
372
target gene predictions
328
candidate regulatory elements
210
histone modifications
197
chromatin state
152
differential activity
100
binding sites
81
variant allelic effects
44
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
222
November, 2021
72
February, 2021
53
June, 2020
47
May, 2020
37
February, 2024
28
January, 2021
23
October, 2022
21
January, 2020
19
April, 2020
13
August, 2021
13
May, 2021
13
May, 2022
9
November, 2022
5
October, 2019
5
September, 2022
2
November, 2020
1
January, 2022
1
June, 2021
Available data
581
bed bed3+
394
bigWig
9
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
539
Homo sapiens
Biosample type
806
cell line
584
primary cell
233
tissue
107
in vitro differentiated cells
Organ
189
epithelium
83
connective tissue
41
vasculature
38
pancreas
31
blood vessel
24
kidney
24
liver
22
musculature of body
13
skin of body
12
mammary gland
11
brain
11
intestine
11
lung
9
artery
9
eye
8
extraembryonic component
8
heart
6
adrenal gland
5
bronchus
5
embryo
5
penis
5
placenta
5
stomach
4
bone element
4
bone marrow
4
vein
3
blood
3
bodily fluid
3
large intestine
3
lymphatic vessel
3
trachea
3
uterus
2
esophagus
2
gonad
2
small intestine
1
ovary
1
thymus
1
thyroid gland
Project
314
AMP
222
ENCODE
29
T1D
19
LungMap
Genome assembly (visualization)
583
hg19
288
GRCh38
BIOSAMPLE
TYPE
584 results
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table-tab-icon
Clear Filters
accessible chromatin
binding sites
primary cell
monocyte
18
1
endothelial cell
15
2
fibroblast
16
1
endothelial cell of hepatic sinusoid
6
6
excitatory neuron
12
macrophage
12
pericyte cell
10
hepatocyte
8
1
smooth muscle cell
9
astrocyte
8
osteoblast
5
3
pancreatic beta cell
8
erythroblast
5
2
pancreatic alpha cell
7
pancreatic ductal cell
6
1
B cell
6
T cell
6
glutamatergic neuron
6
pancreatic acinar cell
6
regulatory T cell
5
1
foreskin fibroblast
1
4
inhibitory neuron
5
mammary epithelial cell
1
4
pancreatic delta cell
5
retinal pigment epithelial cell
3
2
skeletal muscle fiber
5
skeletal muscle satellite cell
5
CD8-positive, alpha-beta T cell
4
endothelial cell of umbilical vein
2
2
memory B cell
4
skeletal muscle myoblast
2
2
type II pneumocyte
4
cardiac fibroblast
3
T-helper 1 cell
3
aortic adventitial fibroblast
1
2
aortic endothelial cell
2
1
bronchial epithelial cell
1
2
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
fibroblast of mammary gland
1
2
fibroblast of pulmonary artery
1
2
fibroblast of villous mesenchyme
1
2
gabaergic neuron
3
hepatic stellate cell
3
keratinocyte
2
1
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
plasma cell
2
1
renal epithelial cell
1
2
tracheal epithelial cell
1
2
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
3
CD1c-positive myeloid dendritic cell
1
1
Ishikawa
1
1
Muller cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
Th1 cell
1
1
Th17 cell
1
1
Th2 cell
1
1
acute myeloid leukemia cell
2
adipocyte
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
capillary endothelial cell
2
cardiac muscle cell
1
1
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
1
1
ciliated cell
2
club cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of proximal tubule
1
1
erythroid cell
1
1
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
fibroblast of lung
2
gamma-delta T cell
2
glial cell
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
1
1
mast cell
1
1
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
mononuclear cell of bone marrow
2
myofibroblast cell
1
1
myotube
2
naive regulatory T cell
2
neoplastic cell
1
1
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
peripheral blood stem cell
1
1
peripheral blood-derived erythroblast
2
plasmacytoid dendritic cell
2
preadipocyte
1
1
primordial germ cell
1
1
pulmonary artery endothelial cell
1
1
pulmonary interstitial fibroblast
1
1
renal cortical epithelial cell
2
schwann cell
2
skin fibroblast
2
smooth muscle cell of the esophagus
2
Adipose stromal cell
1
B-Lymphocytes
1
B-lymphocyte
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
Glioblastoma
1
Rhabdoid Tumor of the Kidney
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
aortic smooth muscle cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell of epidermis
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac endothelial cell
1
cardiac fibroblast
1
cardiac muscle myoblast
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
chronic lymphocytic leukemia cell
1
ciliated epithelial cell
1
colon goblet cell
1
colorectal cancer
1
columnar chondrocyte
1
conventional dendritic cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
eccrine cell
1
endothelial cell of artery
1
endothelial cell of coronary artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
erythrocyte
1
erythroid progenitor cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of dermis
1
fibroblast of peridontal ligament
1
foveolar cell of stomach
1
gastric goblet cell
1
goblet cell
1
granular cell of epidermis
1
head and neck squamous cell carcinoma
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal tuft cell
1
iris pigment epithelial cell
1
islet of Langerhans
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
leukemic stem cell
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature NK T cell
1
mature neutrophil
1
melanocyte
1
meso-epithelial cell
1
metanephros
1
microglial cell
1
microglial cell/astrocyte
1
mononuclear cell
1
myeloid dendritic cell
1
myoepithelial cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neuroendocrine cell
1
neuronal stem cell
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
non-neuronal cell
1
non-pigmented ciliary epithelial cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
peripheral blood mononuclear cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
pre-B acute lymphoblastic leukemia cell
1
prostate gland cancer cell
1
proximal tubule cells with injury markers
1
regular atrial cardiac myocyte
1
renal intercalated cell
1
renal principal cell
1
renal proximal tubule cell
1
respiratory goblet cell
1
retinal bipolar neuron
1
skeletal muscle cell
1
skeletal muscle fibroblast
1
small cell ovarian carcinoma cell
1
small intestine goblet cell
1
smooth muscle cell of the brain vasculature
1
somatic gonadal cell
1
somatic muscle myotube
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
sympathetic neuron
1
thyroid follicular cell
1
trophoblast cell
1
trophoblast giant cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
1
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