Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1339
target gene predictions
977
histone modifications
941
chromatin state
859
accessible chromatin
817
binding sites
683
gene expression
171
eQTL
167
differential activity
74
Fine-mapped variants
61
variant allelic effects
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
pQTL
2
other
1
representative DNase hypersensitivity sites
Date released
289
June, 2020
222
November, 2021
65
January, 2020
May, 2020
49
February, 2024
44
November, 2022
34
August, 2021
29
May, 2021
28
January, 2021
25
February, 2023
19
April, 2020
14
May, 2022
12
November, 2019
11
February, 2021
9
October, 2019
6
September, 2022
4
January, 2022
3
September, 2018
2
November, 2020
1
June, 2021
1
March, 2023
Available data
852
bed bed3+
475
bigWig
9
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
867
Homo sapiens
Biosample type
440
primary cell
195
tissue
163
cell line
69
in vitro differentiated cells
Organ
211
epithelium
90
connective tissue
65
pancreas
59
eye
47
kidney
40
brain
35
vasculature
27
musculature of body
26
heart
25
blood vessel
24
liver
21
intestine
20
limb
15
bone element
15
lung
13
bodily fluid
13
skin of body
12
blood
12
embryo
11
artery
10
large intestine
9
extraembryonic component
8
lymph node
8
skeleton
8
stomach
7
adipose tissue
7
adrenal gland
7
mammary gland
5
gonad
5
prostate gland
4
esophagus
4
lymphatic vessel
4
placenta
4
ureter
3
bronchus
3
nerve
3
penis
3
small intestine
3
uterus
2
bone marrow
2
lymphoid tissue
2
ovary
2
spinal cord
2
spleen
2
testis
2
thymus
2
thyroid gland
1
breast
1
mouth
1
nose
1
tongue
1
trachea
1
urinary bladder
1
vein
Project
595
AMP
222
ENCODE
29
T1D
19
LungMap
2
ITG
Genome assembly (visualization)
857
hg19
384
GRCh38
month_released!
May, 2020
BIOSAMPLE
TYPE
867 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
sQTL
pQTL
primary cell
monocyte
16
1
fibroblast
16
endothelial cell
15
excitatory neuron
12
macrophage
12
+ See 204 more…
tissue
retina
23
pigmented layer of retina
20
kidney
10
islet of Langerhans
4
2
heart
5
+ See 94 more…
cell line
EndoC_BH1
8
HepG2
2
Rh-4 cell
2
fibroblast of cardiac tissue
2
786-O cell
1
+ See 148 more…
in vitro differentiated cells
neural progenitor cell
10
embryonic stem cell
6
retinal pigment epithelial cell
6
SGBS preadipocytes
5
chondrocyte
5
+ See 30 more…
See all biosamples
Download