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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1669
candidate regulatory elements
1072
target gene predictions
872
histone modifications
811
binding sites
579
gene expression
494
accessible chromatin
162
differential activity
84
variant allelic effects
75
chromatin state
36
eQTL
6
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
2
Fine-mapped variants
1
representative DNase hypersensitivity sites
Date released
2579
February, 2021
1672
September, 2022
292
May, 2021
289
June, 2020
286
September, 2023
144
May, 2020
99
October, 2022
95
August, 2021
70
March, 2023
56
January, 2021
56
March, 2020
44
November, 2022
43
May, 2022
39
February, 2020
35
August, 2017
26
February, 2023
21
January, 2020
19
April, 2020
9
August, 2018
2
January, 2018
1
April, 2019
1
August, 2020
1
August, 2022
1
January, 2022
1
July, 2020
1
June, 2021
1
November, 2019
1
November, 2020
1
October, 2019
Available data
4961
bed bed3+
702
tsv
151
bigWig
108
txt
34
bed bed9+
9
bigBed bed9
5
bed bed9
4
bam
4
bigBed narrowPeak
3
bed gappedPeak
3
xls
Organism
5839
Homo sapiens
Biosample type
1986
cell line
1881
tissue
1640
primary cell
373
in vitro differentiated cells
4
stem cell
Organ
669
epithelium
544
kidney
320
connective tissue
312
brain
262
musculature of body
229
lung
203
intestine
200
pancreas
175
vasculature
165
limb
164
bodily fluid
162
heart
155
blood
154
skin of body
135
embryo
128
blood vessel
128
large intestine
109
extraembryonic component
92
eye
91
liver
82
stomach
66
bone element
66
mammary gland
64
adipose tissue
62
prostate gland
60
small intestine
54
lymph node
54
penis
54
placenta
48
ureter
47
artery
46
adrenal gland
37
thymus
35
gonad
30
spinal cord
27
esophagus
25
spleen
23
uterus
19
testis
17
lymphoid tissue
17
vein
16
lymphatic vessel
15
ovary
14
nerve
14
thyroid gland
13
mouth
11
bone marrow
11
bronchus
11
pituitary gland
9
breast
7
skeleton
7
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
1
pericardium
Project
5515
AMP
281
KPMP
57
T1D
19
LungMap
9
community
5
ITG
Genome assembly (visualization)
6657
hg19
GRCh38
4
hg18
assembly!
GRCh38
BIOSAMPLE
TYPE
5886 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
gene expression
accessible chromatin
differential activity
variant allelic effects
chromatin state
eQTL
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
Fine-mapped variants
representative DNase hypersensitivity sites
cell line
A549
21
19
1
2
1
EndoC_BH1
1
1
1
8
7
3
1
MCF-7
9
6
2
3
1
breast cancer cell
11
9
K562
7
7
1
2
1
1
+ See 756 more…
tissue
heart
37
20
1
1
3
2
2
stomach
40
21
1
3
kidney
29
14
2
1
7
1
1
1
brain
29
16
3
1
1
1
1
lung
33
17
+ See 214 more…
primary cell
CD8-positive, alpha-beta T cell
7
4
30
3
3
1
common myeloid progenitor, CD34-positive
27
14
monocyte
2
2
1
15
5
1
2
1
1
B cell
13
10
2
3
CD14-positive monocyte
8
19
+ See 364 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
1
3
4
neural progenitor cell
5
5
2
7
embryonic stem cell
1
1
1
6
5
cardiomyocytes
11
+ See 112 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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