Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1072
target gene predictions
872
histone modifications
810
binding sites
gene expression
521
accessible chromatin
167
differential activity
140
variant allelic effects
75
chromatin state
42
eQTL
6
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
2
Fine-mapped variants
1
representative DNase hypersensitivity sites
Date released
2402
February, 2021
1672
September, 2022
289
June, 2020
202
May, 2021
144
May, 2020
115
September, 2023
99
October, 2022
97
February, 2024
57
March, 2023
56
January, 2021
45
March, 2020
44
November, 2022
43
May, 2022
42
August, 2021
35
August, 2017
26
February, 2023
19
April, 2020
4
January, 2020
2
May, 2024
1
April, 2019
1
August, 2020
1
August, 2022
1
February, 2020
1
January, 2022
1
June, 2021
1
November, 2019
1
October, 2019
Available data
5122
bed bed3+
164
bigWig
163
tsv
34
bed bed9+
16
bigBed narrowPeak
9
bigBed bed9
5
bed bed9
4
bam
3
bed gappedPeak
3
xls
Organism
5355
Homo sapiens
Biosample type
1965
cell line
1805
tissue
1295
primary cell
331
in vitro differentiated cells
4
stem cell
Organ
471
epithelium
345
kidney
295
brain
287
connective tissue
268
musculature of body
230
lung
207
intestine
168
pancreas
164
bodily fluid
161
limb
155
blood
155
skin of body
147
vasculature
141
heart
129
large intestine
125
embryo
109
blood vessel
109
extraembryonic component
92
eye
84
stomach
79
liver
67
mammary gland
63
prostate gland
62
bone element
60
small intestine
54
lymph node
54
penis
54
placenta
51
adipose tissue
48
ureter
47
adrenal gland
39
artery
37
thymus
35
gonad
29
esophagus
29
spinal cord
25
spleen
23
uterus
19
testis
17
lymphoid tissue
17
vein
15
ovary
15
thyroid gland
13
lymphatic vessel
13
mouth
12
bronchus
12
nerve
11
bone marrow
11
pituitary gland
9
breast
7
skeleton
7
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
Project
5200
AMP
110
KPMP
57
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
6952
hg19
GRCh38
hg18
assembly!
hg18
GRCh38
annotation_type!
gene expression
BIOSAMPLE
TYPE
5402 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
accessible chromatin
differential activity
variant allelic effects
chromatin state
eQTL
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
Fine-mapped variants
representative DNase hypersensitivity sites
cell line
A549
21
19
1
2
1
MCF-7
9
6
2
3
1
breast cancer cell
11
9
K562
7
7
1
2
1
1
EndoC_BH1
1
1
1
7
3
1
+ See 753 more…
tissue
stomach
40
21
1
3
heart
37
20
1
1
2
2
brain
29
16
3
1
1
1
lung
33
17
muscle of arm
33
16
1
+ See 204 more…
primary cell
CD8-positive, alpha-beta T cell
7
4
30
3
1
common myeloid progenitor, CD34-positive
27
14
B cell
14
10
3
CD14-positive monocyte
8
19
CD4-positive, alpha-beta memory T cell
14
9
+ See 333 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
1
4
4
embryonic stem cell
1
1
1
6
5
neural progenitor cell
5
5
2
mesenchymal stem cell
3
3
1
1
1
+ See 102 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download