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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1072
target gene predictions
872
histone modifications
810
binding sites
674
gene expression
521
accessible chromatin
167
differential activity
variant allelic effects
75
chromatin state
eQTL
6
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
2
Fine-mapped variants
1
representative DNase hypersensitivity sites
Date released
2575
February, 2021
1672
September, 2022
289
June, 2020
289
May, 2021
286
September, 2023
99
February, 2024
96
October, 2022
69
March, 2023
67
August, 2021
65
May, 2020
56
January, 2021
56
March, 2020
44
November, 2022
43
May, 2022
38
February, 2020
35
August, 2017
30
March, 2024
25
February, 2023
21
January, 2020
19
April, 2020
9
August, 2018
2
January, 2018
1
April, 2019
1
August, 2020
1
August, 2022
1
January, 2022
1
July, 2020
1
June, 2021
1
November, 2019
1
November, 2020
1
October, 2019
Available data
4988
bed bed3+
792
tsv
160
bigWig
108
txt
34
bed bed9+
24
csv
12
bigBed narrowPeak
9
bigBed bed9
5
bed bed9
4
bam
3
bed gappedPeak
3
xls
Organism
5848
Homo sapiens
Biosample type
1982
cell line
1836
tissue
1672
primary cell
399
in vitro differentiated cells
4
stem cell
Organ
671
epithelium
528
kidney
309
connective tissue
297
brain
268
musculature of body
230
lung
207
intestine
195
pancreas
164
vasculature
163
bodily fluid
158
limb
156
skin of body
154
blood
152
heart
135
embryo
131
large intestine
121
blood vessel
109
extraembryonic component
91
eye
85
liver
84
stomach
66
bone element
66
mammary gland
63
prostate gland
60
small intestine
55
adipose tissue
54
lymph node
54
penis
54
placenta
47
adrenal gland
45
ureter
43
artery
37
gonad
37
thymus
30
spinal cord
29
esophagus
26
spleen
25
uterus
20
testis
18
lymphoid tissue
17
vein
16
lymphatic vessel
16
ovary
15
thyroid gland
14
mouth
12
nerve
12
pituitary gland
11
bone marrow
11
bronchus
10
breast
8
tongue
8
urinary bladder
7
skeleton
7
vagina
5
trachea
3
nose
1
pericardium
Project
5527
AMP
281
KPMP
56
T1D
19
LungMap
9
community
2
ITG
Genome assembly (visualization)
6777
hg19
GRCh38
hg18
assembly!
hg18
GRCh38
annotation_type!
variant allelic effects
eQTL
BIOSAMPLE
TYPE
5894 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
gene expression
accessible chromatin
differential activity
chromatin state
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
Fine-mapped variants
representative DNase hypersensitivity sites
cell line
A549
21
19
1
2
1
EndoC_BH1
1
1
1
8
7
3
MCF-7
9
6
2
3
1
breast cancer cell
11
9
K562
7
7
1
2
1
1
+ See 755 more…
tissue
stomach
40
21
1
1
3
heart
37
20
1
1
3
2
kidney
29
14
2
1
7
1
brain
29
16
3
1
1
1
lung
33
17
1
+ See 227 more…
primary cell
CD8-positive, alpha-beta T cell
7
4
30
3
3
1
common myeloid progenitor, CD34-positive
27
14
B cell
14
10
2
3
monocyte
2
2
1
15
5
2
1
1
CD14-positive monocyte
8
19
+ See 365 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
1
4
4
neural progenitor cell
5
5
2
7
embryonic stem cell
1
1
1
6
5
cardiomyocytes
11
+ See 117 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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