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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
464
accessible chromatin
372
target gene predictions
328
candidate regulatory elements
210
histone modifications
197
chromatin state
100
binding sites
76
variant allelic effects
44
eQTL
21
gene expression
11
caQTL
5
hQTL
3
meQTL
2
sQTL
1
other
Date released
487
September, 2022
334
February, 2021
333
November, 2021
187
May, 2021
126
February, 2024
81
May, 2020
56
January, 2021
52
June, 2020
40
May, 2022
37
January, 2022
31
October, 2022
23
January, 2020
April, 2020
17
August, 2021
9
November, 2022
7
October, 2019
6
August, 2017
4
February, 2023
2
November, 2020
1
June, 2021
1
March, 2020
Available data
1576
bed bed3+
391
bigWig
164
bed bed9
27
bed bed9+
16
bigBed narrowPeak
9
tsv
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1789
Homo sapiens
Biosample type
2516
tissue
2320
cell line
1834
primary cell
387
in vitro differentiated cells
4
stem cell
Organ
494
epithelium
236
connective tissue
121
vasculature
100
skin of body
84
blood vessel
72
pancreas
61
kidney
49
liver
49
musculature of body
46
mammary gland
41
penis
40
extraembryonic component
35
brain
31
lung
27
heart
23
eye
23
intestine
22
artery
22
embryo
19
vein
15
bronchus
14
bone element
13
bone marrow
11
adrenal gland
11
lymphatic vessel
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
2
ovary
1
limb
1
testis
1
thymus
Project
1442
AMP
333
ENCODE
59
T1D
Genome assembly (visualization)
1784
hg19
707
GRCh38
month_released!
April, 2020
BIOSAMPLE
TYPE
1834 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
binding sites
variant allelic effects
eQTL
gene expression
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
2
86
1
4
2
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
4
5
7
30
1
B cell
5
10
14
8
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
endothelial cell
15
7
1
2
2
1
1
2
fibroblast
16
4
1
6
2
hepatocyte
8
3
1
4
1
1
2
5
macrophage
11
3
3
7
1
CD8-positive, alpha-beta memory T cell
7
8
7
T cell
5
4
4
4
2
2
pericyte cell
9
10
1
1
regulatory T cell
5
4
5
1
3
1
2
mononuclear cell
6
7
6
1
smooth muscle cell
9
6
2
1
1
1
endothelial cell of umbilical vein
2
4
6
5
2
foreskin keratinocyte
4
11
4
natural killer cell
2
5
6
1
3
1
trophoblast cell
1
5
7
1
4
keratinocyte
2
5
3
2
3
1
1
T-helper 1 cell
3
3
6
3
1
astrocyte
8
4
2
1
1
endothelial cell of hepatic sinusoid
6
6
4
fibroblast of lung
4
6
4
2
foreskin fibroblast
1
2
6
2
1
4
CD4-positive, alpha-beta T cell
1
3
8
3
neutrophil
3
4
2
2
2
1
1
osteoblast
5
2
2
2
1
3
T-helper 17 cell
2
3
5
3
1
T-helper 2 cell
2
3
5
3
1
skeletal muscle myoblast
2
2
4
1
3
2
mammary epithelial cell
1
1
3
3
1
4
mammary gland epithelial cell
1
4
3
3
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
4
2
1
1
1
1
neurosphere
3
7
3
pancreatic ductal cell
6
3
2
1
1
bronchial epithelial cell
1
2
4
1
2
2
excitatory neuron
12
fibroblast of cardiac tissue
2
4
3
3
fibroblast of dermis
4
4
3
1
pancreatic beta cell
8
3
1
skeletal muscle satellite cell
5
2
2
2
1
erythroblast
5
2
2
2
pancreatic alpha cell
7
3
1
dermis blood vessel endothelial cell
2
6
2
pancreatic acinar cell
6
3
1
pancreatic delta cell
5
4
1
retinal pigment epithelial cell
3
1
2
1
1
2
epithelial cell of prostate
3
4
2
kidney tubule cell
2
2
3
2
mature neutrophil
1
7
1
naive T cell
3
3
3
skeletal muscle fiber
5
2
2
skin fibroblast
2
3
2
2
fibroblast of breast
2
4
2
fibroblast of mammary gland
1
1
2
1
1
2
fibroblast of pulmonary artery
1
1
2
1
1
2
fibroblast of villous mesenchyme
1
1
2
1
1
2
glutamatergic neuron
6
2
myoepithelial cell of mammary gland
2
4
2
CD1c-positive myeloid dendritic cell
1
1
2
1
1
1
cardiac muscle cell
1
1
2
1
2
choroid plexus epithelial cell
1
1
2
1
1
1
epithelial cell of proximal tubule
1
1
2
1
1
1
hepatic stellate cell
3
1
1
1
1
luminal epithelial cell of mammary gland
2
3
1
1
mesenchymal stem cell
2
1
1
1
1
1
pulmonary artery endothelial cell
1
1
2
1
1
1
renal cortical epithelial cell
2
1
2
1
1
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
T-cell
2
4
astrocyte of the cerebellum
1
1
2
1
1
astrocyte of the hippocampus
1
1
2
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
epithelial cell of esophagus
1
2
1
2
foreskin melanocyte
1
4
1
glomerular endothelial cell
1
1
2
1
1
glomerular visceral epithelial cell
2
1
2
1
kidney epithelial cell
1
1
2
1
1
kidney glomerular epithelial cell
2
1
2
1
memory B cell
4
2
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
1
olfactory receptor cell
6
peripheral blood mononuclear cell
4
1
1
skeletal muscle cell
1
1
2
1
1
smooth muscle cell of the brain vasculature
1
1
2
1
1
type II pneumocyte
3
2
1
cardiac fibroblast
3
2
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
1
2
2
alternatively activated macrophage
1
4
brain microvascular endothelial cell
1
1
2
1
fibroblast of peridontal ligament
1
1
2
1
fibroblast of the aortic adventitia
1
2
1
1
gabaergic neuron
3
2
inhibitory neuron
5
iris pigment epithelial cell
1
1
2
1
lung microvascular endothelial cell
1
3
1
mast cell
1
1
1
1
1
naive B cell
3
2
non-pigmented ciliary epithelial cell
1
1
2
1
plasma cell
2
1
1
1
tracheal epithelial cell
1
2
2
activated CD4-positive, alpha-beta T cell
1
2
1
acute myeloid leukemia cell
2
2
adipocyte
2
1
1
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the spinal cord
1
2
1
basal cell
1
1
2
blood vessel smooth muscle cell
2
2
cardiac fibroblast
3
1
enteric smooth muscle cell
2
2
fibroblast of gingiva
1
2
1
fibroblast of the conjunctiva
1
2
1
inflammatory macrophage
1
3
kidney capillary endothelial cell
1
1
1
1
megakaryocyte
2
2
mesothelial cell
2
1
1
myofibroblast cell
1
3
pancreatic polypeptide-secreting cell
2
1
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
smooth muscle cell of the esophagus
2
2
stromal cell of bone marrow
1
2
1
Ishikawa
1
1
1
T follicular helper cell
2
1
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD8-positive, alpha-beta T cell
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
endocardial cell
2
1
endothelial cell of lymphatic vessel
2
1
enteric neuron
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
glial cell
2
1
goblet cell
1
2
leukocyte
2
1
mammary stem cell
1
1
1
microglial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic stellate cell
2
1
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
schwann cell
2
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
type I pneumocyte
2
1
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
Th2 cell
1
1
alveolar macrophage
1
1
basal cell of epidermis
1
1
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
1
1
ciliated cell
1
1
club cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
erythroid progenitor cell
1
1
fat cell
1
1
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
gamma-delta T cell
2
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
leukemic stem cell
1
1
luteal cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
mature natural killer cell
2
melanocyte
1
1
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
1
1
myoepithelial cell
1
1
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
renal proximal tubule cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
smooth muscle cell of the coronary artery
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
naive B cel
1
neural progenitor cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal epithelial cell
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
progenitor cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
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