Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
545
accessible chromatin
440
target gene predictions
407
candidate regulatory elements
303
histone modifications
231
chromatin state
138
binding sites
83
variant allelic effects
12
gene expression
9
eQTL
5
caQTL
5
hQTL
3
meQTL
2
other
2
sQTL
Date released
592
September, 2022
496
February, 2021
333
November, 2021
214
May, 2021
118
February, 2024
88
May, 2020
73
June, 2020
56
January, 2021
40
August, 2021
40
May, 2022
29
October, 2022
26
January, 2020
24
November, 2022
19
April, 2020
August, 2017
11
March, 2020
9
October, 2019
5
January, 2022
5
September, 2023
3
November, 2019
2
November, 2020
1
February, 2023
1
June, 2021
Available data
1931
bed bed3+
413
bigWig
204
bed bed9
27
bed bed9+
16
bigBed narrowPeak
9
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2139
Homo sapiens
Biosample type
tissue
cell line
1797
primary cell
383
in vitro differentiated cells
3
stem cell
Organ
506
epithelium
279
connective tissue
119
vasculature
108
skin of body
79
blood vessel
72
pancreas
62
kidney
51
musculature of body
50
embryo
48
mammary gland
47
penis
45
extraembryonic component
44
liver
39
brain
33
lung
29
eye
26
heart
23
intestine
21
artery
18
vein
16
bronchus
14
bone element
14
lymphatic vessel
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
mouth
4
nose
4
small intestine
4
spinal cord
3
gonad
3
thyroid gland
2
ovary
1
adipose tissue
1
limb
1
thymus
Project
1775
AMP
333
ENCODE
58
T1D
19
LungMap
Genome assembly (visualization)
2185
hg19
772
GRCh38
biosample_type!
cell line
tissue
month_released!
August, 2017
BIOSAMPLE
TYPE
2185 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
binding sites
variant allelic effects
gene expression
eQTL
caQTL
hQTL
meQTL
other
sQTL
primary cell
monocyte
18
2
86
1
1
2
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
4
5
7
30
1
B cell
6
10
14
8
CD4-positive, alpha-beta memory T cell
9
14
9
+ See 332 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
1
10
19
1
10
1
neural progenitor cell
10
5
5
14
4
adipocyte
4
6
4
1
2
1
embryonic stem cell
5
1
1
5
1
mesenchymal stem cell
1
3
3
1
2
1
+ See 103 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download