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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
483
accessible chromatin
372
target gene predictions
candidate regulatory elements
210
histone modifications
197
chromatin state
100
binding sites
76
variant allelic effects
12
gene expression
9
eQTL
5
caQTL
5
hQTL
3
meQTL
2
sQTL
1
other
Date released
333
November, 2021
327
September, 2022
187
May, 2021
167
February, 2021
116
February, 2024
81
May, 2020
56
January, 2021
52
June, 2020
40
May, 2022
29
October, 2022
23
January, 2020
19
April, 2020
17
August, 2021
9
November, 2022
7
October, 2019
6
August, 2017
2
January, 2022
2
November, 2020
1
June, 2021
1
March, 2020
Available data
1261
bed bed3+
401
bigWig
164
bed bed9
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1430
Homo sapiens
Biosample type
1983
cell line
1521
tissue
1475
primary cell
308
in vitro differentiated cells
4
stem cell
Organ
405
epithelium
186
connective tissue
86
vasculature
72
pancreas
62
skin of body
59
blood vessel
45
kidney
45
musculature of body
38
liver
33
mammary gland
27
extraembryonic component
26
brain
25
lung
23
intestine
20
heart
20
penis
17
artery
17
eye
15
embryo
13
vein
12
bone element
12
bronchus
11
adrenal gland
11
bone marrow
11
stomach
8
esophagus
8
lymphatic vessel
8
placenta
6
large intestine
6
prostate gland
5
blood
5
bodily fluid
5
trachea
5
uterus
4
small intestine
3
gonad
3
thyroid gland
2
mouth
2
ovary
2
spinal cord
1
limb
1
thymus
Project
1066
AMP
333
ENCODE
57
T1D
19
LungMap
Genome assembly (visualization)
1475
hg19
707
GRCh38
annotation_type!
candidate regulatory elements
BIOSAMPLE
TYPE
1475 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
histone modifications
chromatin state
binding sites
variant allelic effects
gene expression
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
2
86
1
1
2
1
CD8-positive, alpha-beta T cell
4
5
30
1
endothelial cell
15
7
1
2
2
1
1
1
common myeloid progenitor, CD34-positive
14
13
fibroblast
16
4
1
6
B cell
6
10
8
CD14-positive monocyte
19
4
pericyte cell
10
10
1
smooth muscle cell
9
6
2
1
1
1
hepatocyte
8
3
4
1
1
2
CD4-positive, alpha-beta memory T cell
9
9
macrophage
12
3
3
T cell
6
4
4
2
CD8-positive, alpha-beta memory T cell
7
7
astrocyte
8
4
1
1
keratinocyte
2
5
2
3
1
1
regulatory T cell
5
4
1
3
1
endothelial cell of umbilical vein
2
4
5
2
mononuclear cell
6
6
1
osteoblast
5
2
2
1
3
pancreatic ductal cell
6
3
2
1
1
endothelial cell of hepatic sinusoid
6
6
excitatory neuron
12
natural killer cell
3
5
1
3
pancreatic beta cell
8
3
1
erythroblast
5
2
2
2
pancreatic alpha cell
7
3
1
trophoblast cell
1
5
1
4
fibroblast of lung
4
4
2
foreskin fibroblast
1
2
2
1
4
mammary epithelial cell
1
1
3
1
4
mammary gland epithelial cell
1
4
3
1
1
neutrophil
3
2
1
2
1
1
pancreatic acinar cell
6
3
1
pancreatic delta cell
5
4
1
skeletal muscle myoblast
2
2
1
3
2
skeletal muscle satellite cell
5
2
2
1
T-helper 1 cell
3
3
3
fibroblast of cardiac tissue
2
4
3
mature neutrophil
1
7
1
skeletal muscle fiber
5
2
2
T-helper 17 cell
2
3
3
T-helper 2 cell
2
3
3
bronchial epithelial cell
1
2
1
2
2
fibroblast of dermis
4
3
1
foreskin keratinocyte
4
4
glutamatergic neuron
6
2
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
1
1
1
1
1
retinal pigment epithelial cell
3
1
1
1
2
CD4-positive, alpha-beta T cell
1
3
3
skin fibroblast
2
3
2
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
type II pneumocyte
4
2
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
enterocyte
3
3
fibroblast of mammary gland
1
1
1
1
2
fibroblast of pulmonary artery
1
1
1
1
2
fibroblast of villous mesenchyme
1
1
1
1
2
hepatic stellate cell
3
1
1
1
kidney tubule cell
2
2
2
luminal epithelial cell of mammary gland
2
3
1
memory B cell
4
2
mesenchymal stem cell
2
1
1
1
1
naive T cell
3
3
neurosphere
3
3
olfactory receptor cell
6
cardiac fibroblast
3
2
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
1
1
1
1
1
alternatively activated macrophage
1
4
basal cell
2
1
2
cardiac muscle cell
1
1
1
2
choroid plexus epithelial cell
1
1
1
1
1
epithelial cell of prostate
3
2
epithelial cell of proximal tubule
1
1
1
1
1
gabaergic neuron
3
2
inhibitory neuron
5
mast cell
1
1
1
1
1
myofibroblast cell
1
1
3
naive B cell
3
2
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
plasma cell
2
1
1
1
pulmonary artery endothelial cell
1
1
1
1
1
renal cortical epithelial cell
2
1
1
1
tracheal epithelial cell
1
2
2
acute myeloid leukemia cell
2
2
adipocyte
2
1
1
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the cerebellum
1
1
1
1
astrocyte of the hippocampus
1
1
1
1
blood vessel smooth muscle cell
2
2
dermis blood vessel endothelial cell
2
2
dermis lymphatic vessel endothelial cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
epithelial cell of esophagus
1
1
2
fibroblast of breast
2
2
glomerular endothelial cell
1
1
1
1
glomerular visceral epithelial cell
2
1
1
inflammatory macrophage
1
3
kidney epithelial cell
1
1
1
1
kidney glomerular epithelial cell
2
1
1
megakaryocyte
2
2
mesothelial cell
2
1
1
myoepithelial cell of mammary gland
2
2
pancreatic polypeptide-secreting cell
2
1
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
skeletal muscle cell
1
1
1
1
smooth muscle cell of the brain vasculature
1
1
1
1
smooth muscle cell of the esophagus
2
2
type I pneumocyte
3
1
CD4-positive helper T cell
1
2
Ishikawa
1
1
1
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD4-positive, alpha-beta T cell
1
2
bone marrow cell
2
1
brain microvascular endothelial cell
1
1
1
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
erythroid cell
1
1
1
fibroblast of peridontal ligament
1
1
1
glial cell
2
1
goblet cell
1
2
iris pigment epithelial cell
1
1
1
kidney capillary endothelial cell
1
1
1
leukocyte
2
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive t cell
1
1
1
neoplastic cell
1
1
1
non-pigmented ciliary epithelial cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic stellate cell
2
1
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
schwann cell
2
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
T follicular helper cell
2
T-cell
2
Th2 cell
1
1
activated CD8-positive, alpha-beta T cell
1
1
alveolar macrophage
1
1
amnion mesenchymal stem cell
1
1
amniotic stem cell
1
1
astrocyte of the spinal cord
1
1
basal cell of epidermis
1
1
brain pericyte
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
eccrine cell
1
1
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
epidermal melanocyte
1
1
epithelial cell of amnion
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of gingiva
1
1
fibroblast of the aortic adventitia
1
1
fibroblast of the conjunctiva
1
1
foreskin melanocyte
1
1
foveolar cell of stomach
1
1
gamma-delta T cell
2
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
leukemic stem cell
1
1
lung microvascular endothelial cell
1
1
luteal cell
1
1
mammary stem cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
mature natural killer cell
2
melanocyte
1
1
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
1
1
microglial cell
1
1
myoepithelial cell
1
1
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood mononuclear cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
regular cardiac myocyte
1
1
renal proximal tubule cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
stromal cell of bone marrow
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alveolar cell type II
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cardiac fibroblast
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
endothelial cell of artery
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of arm
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal epithelial cell
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
progenitor cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
retinal bipolar neuron
1
seminoma cell
1
smooth muscle cell of the coronary artery
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
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