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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
436
accessible chromatin
356
target gene predictions
328
candidate regulatory elements
210
histone modifications
197
chromatin state
100
binding sites
58
variant allelic effects
12
gene expression
9
eQTL
5
caQTL
5
hQTL
3
meQTL
2
sQTL
1
other
Date released
487
September, 2022
334
February, 2021
333
November, 2021
187
May, 2021
117
February, 2024
May, 2020
56
January, 2021
52
June, 2020
40
May, 2022
29
October, 2022
23
January, 2020
19
April, 2020
17
August, 2021
9
November, 2022
7
October, 2019
6
August, 2017
2
January, 2022
2
November, 2020
1
June, 2021
1
March, 2020
Available data
1508
bed bed3+
355
bigWig
164
bed bed9
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1722
Homo sapiens
Biosample type
2410
tissue
2308
cell line
1722
primary cell
380
in vitro differentiated cells
4
stem cell
Organ
481
epithelium
231
connective tissue
112
vasculature
100
skin of body
78
blood vessel
72
pancreas
57
kidney
48
musculature of body
46
mammary gland
41
penis
40
extraembryonic component
38
liver
34
lung
28
brain
26
heart
23
intestine
22
embryo
22
eye
21
artery
18
vein
16
bronchus
13
bone element
12
bone marrow
12
lymphatic vessel
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
mouth
4
small intestine
4
spinal cord
3
gonad
3
thyroid gland
2
ovary
1
limb
1
thymus
Project
1313
AMP
333
ENCODE
57
T1D
19
LungMap
Genome assembly (visualization)
1722
hg19
706
GRCh38
month_released!
May, 2020
BIOSAMPLE
TYPE
1722 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
binding sites
variant allelic effects
gene expression
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
16
1
86
1
1
2
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
2
4
7
30
1
B cell
4
9
14
8
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
endothelial cell
15
7
1
2
2
1
1
1
fibroblast
16
4
1
6
CD8-positive, alpha-beta memory T cell
7
8
7
pericyte cell
10
10
1
1
T cell
6
4
4
4
2
mononuclear cell
6
7
6
1
smooth muscle cell
9
6
2
1
1
1
foreskin keratinocyte
4
11
4
hepatocyte
8
3
1
4
1
1
1
endothelial cell of umbilical vein
1
4
6
5
2
trophoblast cell
1
5
7
1
4
keratinocyte
2
5
3
2
3
1
1
macrophage
12
2
3
natural killer cell
2
5
6
1
3
regulatory T cell
3
4
5
1
3
1
astrocyte
8
4
2
1
1
fibroblast of lung
4
6
4
2
foreskin fibroblast
1
2
6
2
1
4
osteoblast
5
2
2
2
1
3
CD4-positive, alpha-beta T cell
1
1
8
3
T-helper 1 cell
1
3
6
3
mammary epithelial cell
1
1
3
3
1
4
mammary gland epithelial cell
1
4
3
3
1
1
neurosphere
3
7
3
neutrophil
2
4
2
1
2
1
1
pancreatic ductal cell
6
3
2
1
1
skeletal muscle myoblast
1
2
4
1
3
2
bronchial epithelial cell
1
2
4
1
2
2
endothelial cell of hepatic sinusoid
6
6
excitatory neuron
12
fibroblast of cardiac tissue
2
4
3
3
fibroblast of dermis
4
4
3
1
pancreatic beta cell
8
3
1
skeletal muscle satellite cell
5
2
2
2
1
T-helper 17 cell
3
5
3
T-helper 2 cell
3
5
3
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
4
1
1
1
1
1
pancreatic alpha cell
7
3
1
dermis blood vessel endothelial cell
2
6
2
erythroblast
5
1
2
2
pancreatic acinar cell
6
3
1
pancreatic delta cell
5
4
1
retinal pigment epithelial cell
3
1
2
1
1
2
epithelial cell of prostate
3
4
2
kidney tubule cell
2
2
3
2
mature neutrophil
1
7
1
naive T cell
3
3
3
skeletal muscle fiber
5
2
2
skin fibroblast
2
3
2
2
fibroblast of breast
2
4
2
fibroblast of mammary gland
1
1
2
1
1
2
fibroblast of pulmonary artery
1
1
2
1
1
2
fibroblast of villous mesenchyme
1
1
2
1
1
2
glutamatergic neuron
6
2
myoepithelial cell of mammary gland
2
4
2
CD1c-positive myeloid dendritic cell
1
1
2
1
1
1
hepatic stellate cell
3
1
1
1
1
luminal epithelial cell of mammary gland
2
3
1
1
mesenchymal stem cell
2
1
1
1
1
1
pulmonary artery endothelial cell
1
1
2
1
1
1
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
type II pneumocyte
4
2
1
T-cell
2
4
cardiac muscle cell
1
1
2
1
1
choroid plexus epithelial cell
1
1
2
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
epithelial cell of esophagus
1
2
1
2
epithelial cell of proximal tubule
1
1
2
1
1
foreskin melanocyte
1
4
1
glomerular visceral epithelial cell
2
1
2
1
kidney glomerular epithelial cell
2
1
2
1
olfactory receptor cell
6
peripheral blood mononuclear cell
4
1
1
renal cortical epithelial cell
2
1
2
1
CD14-positive, CD16-negative classical monocyte
5
astrocyte of the cerebellum
1
1
2
1
astrocyte of the hippocampus
1
1
2
1
basal cell
2
1
2
brain microvascular endothelial cell
1
1
2
1
fibroblast of peridontal ligament
1
1
2
1
gabaergic neuron
3
2
glomerular endothelial cell
1
1
2
1
inhibitory neuron
5
iris pigment epithelial cell
1
1
2
1
kidney epithelial cell
1
1
2
1
lung microvascular endothelial cell
1
3
1
mast cell
1
1
1
1
1
myofibroblast cell
1
1
3
non-pigmented ciliary epithelial cell
1
1
2
1
skeletal muscle cell
1
1
2
1
smooth muscle cell of the brain vasculature
1
1
2
1
tracheal epithelial cell
1
2
2
acute myeloid leukemia cell
2
2
adipocyte
2
1
1
alternatively activated macrophage
4
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the spinal cord
1
2
1
blood vessel smooth muscle cell
2
2
cardiac fibroblast
3
1
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of gingiva
1
2
1
fibroblast of the aortic adventitia
1
2
1
fibroblast of the conjunctiva
1
2
1
kidney capillary endothelial cell
1
1
1
1
memory B cell
2
2
mesothelial cell
2
1
1
pancreatic polypeptide-secreting cell
2
1
1
plasma cell
1
1
1
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
smooth muscle cell of the esophagus
2
2
stromal cell of bone marrow
1
2
1
type I pneumocyte
3
1
cardiac fibroblast
3
CD4-positive helper T cell
1
2
Ishikawa
1
1
1
Th1 cell
1
1
1
Th17 cell
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
bone marrow cell
2
1
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
glial cell
2
1
goblet cell
1
2
inflammatory macrophage
3
leukocyte
2
1
mammary stem cell
1
1
1
megakaryocyte
2
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic stellate cell
2
1
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
schwann cell
2
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
Th2 cell
1
1
activated CD4-positive, alpha-beta T cell
1
1
activated CD8-positive, alpha-beta T cell
1
1
alveolar macrophage
1
1
basal cell of epidermis
1
1
brain pericyte
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
leukemic stem cell
1
1
luteal cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
melanocyte
1
1
mesangial cell
2
meso-epithelial cell
1
1
microglial cell
1
1
myoepithelial cell
1
1
naive B cell
1
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
1
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood-derived erythroblast
2
plasmacytoid dendritic cell
1
1
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
renal proximal tubule cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
acute myeloid leukemia
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of artery
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
hepatoblast
1
induced T-regulatory cell
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal epithelial cell
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
progenitor cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
retinal bipolar neuron
1
seminoma cell
1
smooth muscle cell of the coronary artery
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
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