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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
459
accessible chromatin
359
target gene predictions
306
candidate regulatory elements
210
histone modifications
183
chromatin state
97
binding sites
72
variant allelic effects
12
gene expression
9
eQTL
5
caQTL
5
hQTL
3
meQTL
2
sQTL
1
other
Date released
454
September, 2022
330
November, 2021
322
February, 2021
186
May, 2021
117
February, 2024
76
May, 2020
56
January, 2021
47
June, 2020
40
May, 2022
27
October, 2022
19
April, 2020
14
January, 2020
9
August, 2021
9
November, 2022
7
October, 2019
5
August, 2017
2
January, 2022
2
November, 2020
1
June, 2021
Available data
1522
bed bed3+
382
bigWig
151
bed bed9
27
bed bed9+
16
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
1678
Homo sapiens
Biosample type
2270
cell line
2171
tissue
1723
primary cell
386
in vitro differentiated cells
4
stem cell
Organ
491
epithelium
235
connective tissue
118
vasculature
100
skin of body
80
blood vessel
72
pancreas
kidney
49
musculature of body
46
mammary gland
41
penis
40
extraembryonic component
40
liver
35
brain
34
lung
26
heart
23
eye
23
intestine
22
embryo
21
artery
vein
16
bronchus
14
bone element
13
bone marrow
12
lymphatic vessel
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
mouth
4
small intestine
4
spinal cord
3
gonad
3
thyroid gland
2
ovary
1
limb
1
thymus
Project
1317
AMP
330
ENCODE
57
T1D
19
LungMap
Genome assembly (visualization)
1723
hg19
683
GRCh38
organ_slims!
vein
kidney
BIOSAMPLE
TYPE
1723 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
binding sites
variant allelic effects
gene expression
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
2
86
1
1
2
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
4
5
7
30
1
B cell
6
10
14
8
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
endothelial cell
15
7
1
2
2
1
1
1
fibroblast
16
4
1
6
CD8-positive, alpha-beta memory T cell
7
8
7
pericyte cell
10
10
1
1
T cell
6
4
4
4
2
hepatocyte
8
3
1
4
1
1
2
mononuclear cell
6
7
6
1
smooth muscle cell
9
6
2
1
1
1
foreskin keratinocyte
4
11
4
regulatory T cell
5
4
5
1
3
1
macrophage
12
3
3
natural killer cell
3
5
6
1
3
trophoblast cell
1
5
7
1
4
keratinocyte
2
5
3
2
3
1
1
astrocyte
8
4
2
1
1
fibroblast of lung
4
6
4
2
foreskin fibroblast
1
2
6
2
1
4
CD4-positive, alpha-beta T cell
1
3
8
3
T-helper 1 cell
3
3
6
3
osteoblast
5
2
2
2
1
3
neutrophil
3
4
2
1
2
1
1
skeletal muscle myoblast
2
2
4
1
3
2
T-helper 17 cell
2
3
5
3
T-helper 2 cell
2
3
5
3
mammary epithelial cell
1
1
3
3
1
4
mammary gland epithelial cell
1
4
3
3
1
1
neurosphere
3
7
3
pancreatic ductal cell
6
3
2
1
1
bronchial epithelial cell
1
2
4
1
2
2
endothelial cell of hepatic sinusoid
6
6
excitatory neuron
12
fibroblast of cardiac tissue
2
4
3
3
fibroblast of dermis
4
4
3
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
4
1
1
1
1
1
pancreatic beta cell
8
3
1
skeletal muscle satellite cell
5
2
2
2
1
erythroblast
5
2
2
2
pancreatic alpha cell
7
3
1
dermis blood vessel endothelial cell
2
6
2
pancreatic acinar cell
6
3
1
pancreatic delta cell
5
4
1
retinal pigment epithelial cell
3
1
2
1
1
2
epithelial cell of prostate
3
4
2
mature neutrophil
1
7
1
naive T cell
3
3
3
skeletal muscle fiber
5
2
2
skin fibroblast
2
3
2
2
fibroblast of breast
2
4
2
fibroblast of mammary gland
1
1
2
1
1
2
fibroblast of pulmonary artery
1
1
2
1
1
2
fibroblast of villous mesenchyme
1
1
2
1
1
2
glutamatergic neuron
6
2
myoepithelial cell of mammary gland
2
4
2
CD1c-positive myeloid dendritic cell
1
1
2
1
1
1
cardiac muscle cell
1
1
2
1
2
choroid plexus epithelial cell
1
1
2
1
1
1
hepatic stellate cell
3
1
1
1
1
luminal epithelial cell of mammary gland
2
3
1
1
mesenchymal stem cell
2
1
1
1
1
1
pulmonary artery endothelial cell
1
1
2
1
1
1
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
type II pneumocyte
4
2
1
T-cell
2
4
astrocyte of the cerebellum
1
1
2
1
1
astrocyte of the hippocampus
1
1
2
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
epithelial cell of esophagus
1
2
1
2
foreskin melanocyte
1
4
1
memory B cell
4
2
olfactory receptor cell
6
peripheral blood mononuclear cell
4
1
1
skeletal muscle cell
1
1
2
1
1
smooth muscle cell of the brain vasculature
1
1
2
1
1
cardiac fibroblast
3
2
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
1
4
basal cell
2
1
2
brain microvascular endothelial cell
1
1
2
1
fibroblast of peridontal ligament
1
1
2
1
gabaergic neuron
3
2
inhibitory neuron
5
iris pigment epithelial cell
1
1
2
1
lung microvascular endothelial cell
1
3
1
mast cell
1
1
1
1
1
myofibroblast cell
1
1
3
naive B cell
3
2
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
non-pigmented ciliary epithelial cell
1
1
2
1
plasma cell
2
1
1
1
tracheal epithelial cell
1
2
2
acute myeloid leukemia cell
2
2
adipocyte
2
1
1
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the spinal cord
1
2
1
blood vessel smooth muscle cell
2
2
cardiac fibroblast
3
1
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of gingiva
1
2
1
fibroblast of the aortic adventitia
1
2
1
fibroblast of the conjunctiva
1
2
1
inflammatory macrophage
1
3
megakaryocyte
2
2
mesothelial cell
2
1
1
pancreatic polypeptide-secreting cell
2
1
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
smooth muscle cell of the esophagus
2
2
stromal cell of bone marrow
1
2
1
type I pneumocyte
3
1
CD4-positive helper T cell
1
2
Ishikawa
1
1
1
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD4-positive, alpha-beta T cell
1
2
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
bone marrow cell
2
1
brain pericyte
1
1
1
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
glial cell
2
1
goblet cell
1
2
leukocyte
2
1
mammary stem cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic stellate cell
2
1
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
schwann cell
2
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
T follicular helper cell
2
Th2 cell
1
1
activated CD8-positive, alpha-beta T cell
1
1
alveolar macrophage
1
1
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
gamma-delta T cell
2
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
leukemic stem cell
1
1
luteal cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
mature natural killer cell
2
melanocyte
1
1
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
1
1
microglial cell
1
1
myoepithelial cell
1
1
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
renal proximal tubule cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of artery
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
progenitor cell
1
proximal tubule cells with injury markers
1
retinal bipolar neuron
1
seminoma cell
1
smooth muscle cell of the coronary artery
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
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