Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
136
target gene predictions
91
accessible chromatin
89
candidate regulatory elements
52
chromatin state
35
binding sites
27
histone modifications
15
variant allelic effects
11
eQTL
6
Fine-mapped variants
2
gene expression
2
pQTL
1
caQTL
Date released
132
September, 2022
97
February, 2021
67
February, 2024
52
November, 2021
22
June, 2020
15
May, 2021
13
October, 2022
9
January, 2020
9
March, 2020
9
May, 2020
8
August, 2021
7
August, 2017
7
November, 2022
3
April, 2020
3
May, 2022
2
February, 2020
2
January, 2021
2
November, 2020
2
October, 2019
2
September, 2018
2
September, 2023
1
June, 2021
Available data
405
bed bed3+
56
bigWig
45
bed bed9
8
tsv
2
bigBed bed9
1
bigBed narrowPeak
Organism
467
Homo sapiens
Biosample type
240
primary cell
96
cell line
82
tissue
48
in vitro differentiated cells
1
stem cell
Organ
600
epithelium
423
brain
387
connective tissue
387
kidney
367
musculature of body
309
lung
283
intestine
237
limb
229
heart
217
bodily fluid
206
blood
205
embryo
204
vasculature
199
skin of body
186
pancreas
170
large intestine
159
blood vessel
145
extraembryonic component
124
liver
116
stomach
107
eye
87
mammary gland
85
bone element
83
small intestine
80
uterus
76
prostate gland
72
placenta
71
adrenal gland
69
adipose tissue
64
penis
64
ureter
62
lymph node
60
artery
49
thymus
45
gonad
41
spinal cord
esophagus
32
spleen
23
lymphoid tissue
23
testis
22
nerve
21
ovary
21
thyroid gland
21
vein
18
skeleton
17
mouth
16
bronchus
16
lymphatic vessel
13
bone marrow
11
breast
11
pituitary gland
9
tongue
9
urinary bladder
8
vagina
5
trachea
4
nose
Project
406
AMP
52
ENCODE
4
ITG
3
LungMap
2
T1D
Genome assembly (visualization)
467
hg19
180
GRCh38
2
hg18
organ_slims!
esophagus
BIOSAMPLE
TYPE
467 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
accessible chromatin
candidate regulatory elements
chromatin state
binding sites
histone modifications
variant allelic effects
eQTL
Fine-mapped variants
gene expression
pQTL
caQTL
primary cell
fibroblast
4
16
1
6
pericyte cell
10
10
1
1
fibroblast of lung
4
6
4
2
foreskin fibroblast
2
1
6
1
4
2
osteoblast
2
5
2
1
3
2
+ See 34 more…
cell line
HeLa-S3
55
5
3
1
GM23248
1
1
2
1
1
1
fibroblast of cardiac tissue
2
1
2
HT1080
1
2
1
foreskin fibroblast
1
1
1
+ See 9 more…
tissue
adipose tissue
8
2
7
6
1
1
3
omental fat pad
2
2
5
2
1
3
subcutaneous adipose tissue
2
2
1
1
4
3
uterus
2
1
3
1
subcutaneous abdominal adipose tissue
5
1
+ See 7 more…
in vitro differentiated cells
adipocyte
6
4
4
6
1
1
mesenchymal stem cell
3
1
3
2
1
1
chondrocyte
5
fibroblast
1
1
Adipose SGBS cell line (adipocyte)
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
See all biosamples
Download