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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
328
candidate regulatory elements
261
accessible chromatin
261
target gene predictions
210
histone modifications
197
chromatin state
100
binding sites
76
variant allelic effects
12
gene expression
9
eQTL
5
caQTL
5
hQTL
3
meQTL
2
sQTL
1
other
Date released
487
September, 2022
334
February, 2021
187
May, 2021
117
February, 2024
81
May, 2020
56
January, 2021
52
June, 2020
40
May, 2022
29
October, 2022
23
January, 2020
19
April, 2020
17
August, 2021
9
November, 2022
7
October, 2019
6
August, 2017
2
January, 2022
2
November, 2020
1
June, 2021
1
March, 2020
Available data
1256
bed bed3+
179
bigWig
164
bed bed9
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1425
Homo sapiens
Biosample type
2458
tissue
2310
cell line
1470
primary cell
387
in vitro differentiated cells
4
stem cell
Organ
364
epithelium
185
connective tissue
112
vasculature
90
skin of body
77
blood vessel
58
kidney
54
pancreas
41
penis
40
mammary gland
38
musculature of body
37
extraembryonic component
35
brain
35
liver
25
lung
21
artery
20
embryo
19
eye
19
vein
16
heart
14
bronchus
13
bone element
12
bone marrow
10
prostate gland
9
blood
9
bodily fluid
9
lymphatic vessel
8
placenta
6
esophagus
5
trachea
4
intestine
4
mouth
4
spinal cord
3
uterus
2
stomach
1
adrenal gland
1
gonad
1
limb
1
thyroid gland
Project
1394
AMP
ENCODE
57
T1D
19
LungMap
Genome assembly (visualization)
1470
hg19
374
GRCh38
award.project!
ENCODE
BIOSAMPLE
TYPE
1470 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
accessible chromatin
target gene predictions
histone modifications
chromatin state
binding sites
variant allelic effects
gene expression
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
2
86
1
1
2
1
common myeloid progenitor, CD34-positive
27
14
13
CD8-positive, alpha-beta T cell
7
3
4
30
1
B cell
14
3
10
8
CD4-positive, alpha-beta memory T cell
14
9
9
CD14-positive monocyte
8
19
4
CD8-positive, alpha-beta memory T cell
8
7
7
mononuclear cell
7
6
6
1
endothelial cell of umbilical vein
6
2
4
5
2
foreskin keratinocyte
11
4
4
regulatory T cell
5
5
4
1
3
1
hepatocyte
1
7
2
4
1
1
2
natural killer cell
6
3
5
1
3
trophoblast cell
7
1
5
1
4
T cell
4
2
4
4
2
fibroblast of lung
6
4
4
2
foreskin fibroblast
6
1
2
2
1
4
T-helper 1 cell
6
3
3
3
osteoblast
2
5
2
2
1
3
endothelial cell
5
1
1
2
2
1
1
1
neutrophil
4
3
2
1
2
1
1
skeletal muscle myoblast
4
2
2
1
3
2
CD4-positive, alpha-beta T cell
8
2
3
T-helper 17 cell
5
2
3
3
T-helper 2 cell
5
2
3
3
keratinocyte
3
3
2
3
1
1
mammary epithelial cell
3
1
1
3
1
4
neurosphere
7
3
3
bronchial epithelial cell
4
1
2
1
2
2
fibroblast of dermis
4
4
3
1
naive thymus-derived CD4-positive, alpha-beta T cell
4
1
2
1
1
1
1
1
mammary gland epithelial cell
3
3
3
1
1
dermis blood vessel endothelial cell
6
2
2
endothelial cell of hepatic sinusoid
4
6
pancreatic beta cell
6
3
1
pancreatic ductal cell
4
2
2
1
1
epithelial cell of prostate
4
3
2
fibroblast
2
1
6
fibroblast of cardiac tissue
3
3
3
kidney tubule cell
3
2
2
2
mature neutrophil
1
7
1
naive T cell
3
3
3
pancreatic alpha cell
5
3
1
retinal pigment epithelial cell
2
2
1
1
1
2
fibroblast of breast
4
2
2
fibroblast of mammary gland
2
1
1
1
1
2
fibroblast of pulmonary artery
2
1
1
1
1
2
fibroblast of villous mesenchyme
2
1
1
1
1
2
macrophage
3
2
3
myoepithelial cell of mammary gland
4
2
2
pancreatic delta cell
4
3
1
skeletal muscle satellite cell
2
2
1
2
1
smooth muscle cell
3
2
1
1
1
CD1c-positive myeloid dendritic cell
2
1
1
1
1
1
astrocyte
2
1
2
1
1
cardiac muscle cell
2
1
1
1
2
choroid plexus epithelial cell
2
1
1
1
1
1
epithelial cell of proximal tubule
2
1
1
1
1
1
mesenchymal stem cell
1
2
1
1
1
1
pulmonary artery endothelial cell
2
1
1
1
1
1
renal cortical epithelial cell
2
2
1
1
1
skin fibroblast
2
1
2
2
T-cell
4
2
astrocyte of the cerebellum
2
1
1
1
1
astrocyte of the hippocampus
2
1
1
1
1
dermis lymphatic vessel endothelial cell
2
2
2
epithelial cell of esophagus
2
1
1
2
erythroblast
2
2
2
foreskin melanocyte
4
1
1
glomerular endothelial cell
2
1
1
1
1
glomerular visceral epithelial cell
2
2
1
1
hepatic stellate cell
1
2
1
1
1
kidney epithelial cell
2
1
1
1
1
kidney glomerular epithelial cell
2
2
1
1
olfactory receptor cell
6
pancreatic acinar cell
3
2
1
peripheral blood mononuclear cell
4
1
1
skeletal muscle cell
2
1
1
1
1
skeletal muscle fiber
2
2
2
smooth muscle cell of the brain vasculature
2
1
1
1
1
cardiac fibroblast
3
2
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
1
4
brain microvascular endothelial cell
2
1
1
1
fibroblast of peridontal ligament
2
1
1
1
iris pigment epithelial cell
2
1
1
1
lung microvascular endothelial cell
3
1
1
myofibroblast cell
1
1
3
naive B cell
3
2
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
non-pigmented ciliary epithelial cell
2
1
1
1
tracheal epithelial cell
1
2
2
type I muscle cell
2
1
1
1
type II muscle cell
2
1
1
1
acute myeloid leukemia cell
2
2
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the spinal cord
2
1
1
cardiac fibroblast
3
1
fibroblast of gingiva
2
1
1
fibroblast of the aortic adventitia
2
1
1
fibroblast of the conjunctiva
2
1
1
glutamatergic neuron
4
inflammatory macrophage
1
3
kidney capillary endothelial cell
1
1
1
1
memory B cell
3
1
pancreatic polypeptide-secreting cell
2
1
1
pericyte cell
1
1
1
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
stromal cell of bone marrow
2
1
1
CD4-positive helper T cell
1
2
Ishikawa
1
1
1
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD4-positive, alpha-beta T cell
1
2
adipocyte
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
basal cell
1
2
bone marrow cell
2
1
brain pericyte
1
1
1
enterocyte
3
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
leukocyte
2
1
luminal epithelial cell of mammary gland
1
1
1
mammary stem cell
1
1
1
mast cell
1
1
1
megakaryocyte
1
2
mononuclear cell of bone marrow
1
2
myotube
1
2
neoplastic cell
1
1
1
pancreatic stellate cell
2
1
peripheral blood stem cell
1
1
1
plasma cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
T follicular helper cell
2
Th2 cell
1
1
activated CD8-positive, alpha-beta T cell
1
1
capillary endothelial cell
2
cardiac muscle myoblast
1
1
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
gamma-delta T cell
2
glial cell
1
1
goblet cell
2
head and neck squamous cell carcinoma
1
1
leukemic stem cell
1
1
mantle cell lymphoma cell
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
meso-epithelial cell
1
1
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuronal stem cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
renal proximal tubule cell
1
1
small cell ovarian carcinoma cell
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
type II pneumocyte
1
1
vascular associated smooth muscle cell
2
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cell
1
ciliated cell
1
club cell
1
colorectal cancer
1
cortical cell of adrenal gland
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of artery
1
endothelial cell of coronary artery
1
endothelial cell of lymphatic vessel
1
erythrocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gabaergic neuron
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesothelial cell
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
naive t cell
1
neural progenitor cell
1
neuroendocrine cell
1
neuron
1
neutrophil progenitor cell
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic A cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
peripheral blood
1
progenitor cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
seminoma cell
1
smooth muscle cell of the coronary artery
1
somatic gonadal cell
1
sperm
1
thyroid follicular cell
1
type B pancreatic cell
1
type I pneumocyte
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
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