Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
971
histone modifications
839
candidate regulatory elements
817
binding sites
685
accessible chromatin
683
gene expression
412
target gene predictions
167
differential activity
166
eQTL
140
variant allelic effects
111
chromatin state
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
1
pQTL
1
representative DNase hypersensitivity sites
Date released
2590
February, 2021
September, 2022
389
May, 2021
378
February, 2024
289
June, 2020
286
September, 2023
155
May, 2020
128
March, 2020
123
August, 2021
106
January, 2022
101
October, 2022
89
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
35
August, 2017
32
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
3
November, 2020
3
September, 2018
2
January, 2018
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
3911
bed bed3+
898
tsv
320
bigWig
108
txt
40
bigBed bed9
36
bed bed9
34
bed bed9+
24
csv
15
bigBed narrowPeak
1
bam
Organism
5052
Homo sapiens
Biosample type
1810
cell line
1649
primary cell
1270
tissue
365
in vitro differentiated cells
4
stem cell
Organ
671
epithelium
424
kidney
286
brain
284
connective tissue
215
pancreas
185
vasculature
160
musculature of body
143
bodily fluid
141
blood vessel
138
blood
137
heart
132
embryo
106
intestine
106
limb
105
liver
92
lung
92
skin of body
78
eye
70
large intestine
69
uterus
65
adipose tissue
54
artery
46
bone element
44
extraembryonic component
41
stomach
39
mammary gland
39
prostate gland
38
lymph node
34
penis
25
ureter
24
gonad
23
placenta
23
small intestine
21
adrenal gland
20
esophagus
19
spinal cord
17
vein
16
nerve
16
spleen
15
thymus
14
testis
13
pituitary gland
12
lymphatic vessel
9
bone marrow
9
lymphoid tissue
9
ovary
9
skeleton
9
thyroid gland
8
bronchus
7
breast
7
mouth
5
trachea
4
tongue
4
urinary bladder
4
vagina
1
nose
1
pericardium
Project
4731
AMP
ENCODE
281
KPMP
60
T1D
19
LungMap
9
community
ITG
Genome assembly (visualization)
4115
hg19
699
GRCh38
4
hg18
award.project!
ENCODE
ITG
month_released!
September, 2022
BIOSAMPLE
TYPE
5100 results
search-icon
table-tab-icon
Clear Filters
histone modifications
candidate regulatory elements
binding sites
accessible chromatin
gene expression
target gene predictions
differential activity
eQTL
variant allelic effects
chromatin state
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
cell line
HeLa-S3
2
1
52
H1-hESC
1
2
1
8
38
EndoC_BH1
1
1
8
8
1
3
1
K562
1
1
2
1
17
1
breast cancer cell
11
9
+ See 746 more…
primary cell
monocyte
86
1
18
15
2
4
2
1
1
CD8-positive, alpha-beta T cell
30
7
3
3
4
1
hepatocyte
4
1
7
13
1
2
endothelial cell
1
2
5
9
1
1
2
2
epithelial cell of proximal tubule
1
1
1
16
1
+ See 382 more…
tissue
islet of Langerhans
1
2
5
11
1
13
1
3
2
2
2
kidney
2
15
1
10
7
1
1
2
heart
1
18
1
5
3
1
2
2
retina
1
3
1
23
1
1
1
stomach
1
21
3
1
2
1
+ See 256 more…
in vitro differentiated cells
neural progenitor cell
15
1
10
7
1
adipocyte
1
2
1
4
1
4
4
embryonic stem cell
1
1
6
1
5
hematopoietic multipotent progenitor cell
1
9
1
1
1
cardiomyocytes
11
+ See 119 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download