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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
328
candidate regulatory elements
233
target gene predictions
213
accessible chromatin
210
histone modifications
197
chromatin state
100
binding sites
76
variant allelic effects
12
gene expression
9
eQTL
5
caQTL
5
hQTL
3
meQTL
2
sQTL
1
other
Date released
487
September, 2022
334
February, 2021
187
May, 2021
116
February, 2024
81
May, 2020
52
June, 2020
40
May, 2022
29
October, 2022
23
January, 2020
17
August, 2021
9
November, 2022
7
October, 2019
6
August, 2017
2
January, 2022
2
November, 2020
1
June, 2021
1
March, 2020
Available data
1180
bed bed3+
164
bed bed9
132
bigWig
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1349
Homo sapiens
Biosample type
2453
tissue
2310
cell line
1394
primary cell
387
in vitro differentiated cells
4
stem cell
Organ
337
epithelium
180
connective tissue
109
vasculature
90
skin of body
75
blood vessel
58
kidney
41
penis
40
mammary gland
38
musculature of body
37
extraembryonic component
35
brain
35
liver
34
pancreas
22
lung
21
artery
20
embryo
19
eye
19
vein
16
heart
13
bronchus
11
bone element
10
bone marrow
10
prostate gland
9
blood
9
bodily fluid
8
lymphatic vessel
8
placenta
6
esophagus
5
trachea
4
intestine
4
mouth
4
spinal cord
3
uterus
2
stomach
1
adrenal gland
1
gonad
1
limb
1
thyroid gland
Project
1394
AMP
333
ENCODE
57
T1D
19
LungMap
Genome assembly (visualization)
1394
hg19
371
GRCh38
BIOSAMPLE
TYPE
1394 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
histone modifications
chromatin state
binding sites
variant allelic effects
gene expression
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
1
17
86
1
1
2
1
common myeloid progenitor, CD34-positive
27
14
13
CD8-positive, alpha-beta T cell
7
3
2
30
1
B cell
14
10
2
8
CD4-positive, alpha-beta memory T cell
14
9
9
CD14-positive monocyte
8
19
4
CD8-positive, alpha-beta memory T cell
8
7
7
mononuclear cell
7
6
6
1
endothelial cell of umbilical vein
6
4
2
5
2
foreskin keratinocyte
11
4
4
hepatocyte
1
2
7
4
1
1
2
trophoblast cell
7
5
1
1
4
regulatory T cell
5
3
4
1
3
1
fibroblast of lung
6
4
4
2
foreskin fibroblast
6
2
1
2
1
4
T cell
4
4
1
4
2
T-helper 1 cell
6
3
3
3
natural killer cell
6
4
1
1
3
osteoblast
2
2
5
2
1
3
neutrophil
4
3
2
1
2
1
1
skeletal muscle myoblast
4
2
2
1
3
2
CD4-positive, alpha-beta T cell
8
2
3
T-helper 17 cell
5
3
2
3
T-helper 2 cell
5
3
2
3
keratinocyte
3
3
2
3
1
1
mammary epithelial cell
3
1
1
3
1
4
neurosphere
7
3
3
bronchial epithelial cell
4
2
1
1
2
2
endothelial cell
4
1
2
2
1
1
1
fibroblast of dermis
4
4
3
1
mammary gland epithelial cell
3
3
3
1
1
dermis blood vessel endothelial cell
6
2
2
endothelial cell of hepatic sinusoid
4
6
naive thymus-derived CD4-positive, alpha-beta T cell
4
1
1
1
1
1
1
epithelial cell of prostate
4
3
2
fibroblast
2
1
6
fibroblast of cardiac tissue
3
3
3
kidney tubule cell
3
2
2
2
mature neutrophil
1
7
1
naive T cell
3
3
3
retinal pigment epithelial cell
2
1
2
1
1
2
fibroblast of breast
4
2
2
fibroblast of mammary gland
2
1
1
1
1
2
fibroblast of pulmonary artery
2
1
1
1
1
2
fibroblast of villous mesenchyme
2
1
1
1
1
2
myoepithelial cell of mammary gland
4
2
2
pancreatic ductal cell
1
3
2
1
1
skeletal muscle satellite cell
2
1
2
2
1
smooth muscle cell
3
2
1
1
1
CD1c-positive myeloid dendritic cell
2
1
1
1
1
1
astrocyte
2
2
1
1
1
cardiac muscle cell
2
1
1
1
2
choroid plexus epithelial cell
2
1
1
1
1
1
epithelial cell of proximal tubule
2
1
1
1
1
1
mesenchymal stem cell
1
2
1
1
1
1
pulmonary artery endothelial cell
2
1
1
1
1
1
renal cortical epithelial cell
2
1
2
1
1
skin fibroblast
2
2
1
2
T-cell
4
2
astrocyte of the cerebellum
2
1
1
1
1
astrocyte of the hippocampus
2
1
1
1
1
dermis lymphatic vessel endothelial cell
2
2
2
epithelial cell of esophagus
2
1
1
2
erythroblast
2
2
2
foreskin melanocyte
4
1
1
glomerular endothelial cell
2
1
1
1
1
glomerular visceral epithelial cell
2
1
2
1
hepatic stellate cell
1
1
2
1
1
kidney epithelial cell
2
1
1
1
1
kidney glomerular epithelial cell
2
1
2
1
olfactory receptor cell
6
pancreatic beta cell
1
4
1
peripheral blood mononuclear cell
4
1
1
skeletal muscle cell
2
1
1
1
1
skeletal muscle fiber
2
2
2
smooth muscle cell of the brain vasculature
2
1
1
1
1
cardiac fibroblast
3
2
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
1
4
brain microvascular endothelial cell
2
1
1
1
fibroblast of peridontal ligament
2
1
1
1
iris pigment epithelial cell
2
1
1
1
lung microvascular endothelial cell
3
1
1
macrophage
1
1
3
non-pigmented ciliary epithelial cell
2
1
1
1
pancreatic alpha cell
1
3
1
tracheal epithelial cell
1
2
2
type I muscle cell
2
1
1
1
type II muscle cell
2
1
1
1
acute myeloid leukemia cell
2
2
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the spinal cord
2
1
1
cardiac fibroblast
3
1
fibroblast of gingiva
2
1
1
fibroblast of the aortic adventitia
2
1
1
fibroblast of the conjunctiva
2
1
1
glutamatergic neuron
4
inflammatory macrophage
1
3
kidney capillary endothelial cell
1
1
1
1
myofibroblast cell
1
3
pancreatic acinar cell
1
2
1
pancreatic delta cell
1
2
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
stromal cell of bone marrow
2
1
1
Ishikawa
1
1
1
Th1 cell
1
1
1
Th17 cell
1
1
1
adipocyte
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
bone marrow cell
2
1
brain pericyte
1
1
1
enterocyte
3
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
leukocyte
2
1
luminal epithelial cell of mammary gland
1
1
1
mammary stem cell
1
1
1
mast cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cell
1
2
naive thymus-derived CD8-positive, alpha-beta T cell
1
2
neoplastic cell
1
1
1
pericyte cell
1
1
1
peripheral blood stem cell
1
1
1
plasma cell
1
1
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive helper T cell
2
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
T follicular helper cell
2
Th2 cell
1
1
basal cell
2
cardiac muscle myoblast
1
1
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
1
1
columnar chondrocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
erythroid progenitor cell
1
1
gamma-delta T cell
2
glial cell
1
1
goblet cell
2
head and neck squamous cell carcinoma
1
1
leukemic stem cell
1
1
mantle cell lymphoma cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
meso-epithelial cell
1
1
naive regulatory T cell
2
neural cell
1
1
neuronal stem cell
1
1
pancreatic endocrine cell
1
1
pancreatic polypeptide-secreting cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
renal proximal tubule cell
1
1
small cell ovarian carcinoma cell
1
1
somatic muscle myotube
1
1
vascular associated smooth muscle cell
2
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD4-positive, alpha-beta T cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cell
1
colorectal cancer
1
cortical cell of adrenal gland
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of coronary artery
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gabaergic neuron
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature eosinophil
1
megakaryocyte
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesothelial cell
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
naive t cell
1
neural progenitor cell
1
neuron
1
neutrophil progenitor cell
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic A cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic stellate cell
1
parietal cell
1
peptic cell
1
peripheral blood
1
plasmacytoid dendritic cell
1
progenitor cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
seminoma cell
1
smooth muscle cell of the coronary artery
1
somatic gonadal cell
1
sperm
1
thyroid follicular cell
1
type B pancreatic cell
1
type II pneumocyte
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
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