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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
328
candidate regulatory elements
233
target gene predictions
214
accessible chromatin
210
histone modifications
197
chromatin state
100
binding sites
81
variant allelic effects
44
eQTL
41
gene expression
9
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
487
September, 2022
334
February, 2021
188
May, 2021
116
February, 2024
86
May, 2020
53
June, 2020
40
May, 2022
37
January, 2022
29
October, 2022
23
January, 2020
17
August, 2021
16
February, 2020
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
5
March, 2020
4
February, 2023
2
November, 2020
1
June, 2021
Available data
1184
bed bed3+
tsv
164
bed bed9
141
bigWig
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1424
Homo sapiens
Biosample type
2435
tissue
2321
cell line
1469
primary cell
395
in vitro differentiated cells
4
stem cell
Organ
360
epithelium
191
connective tissue
115
vasculature
90
skin of body
81
blood vessel
68
kidney
41
pancreas
41
penis
40
liver
40
mammary gland
39
musculature of body
37
extraembryonic component
35
brain
24
artery
22
lung
21
heart
20
embryo
20
vein
19
eye
13
bronchus
11
bone element
10
bone marrow
10
prostate gland
9
blood
9
bodily fluid
8
lymphatic vessel
8
placenta
6
esophagus
5
trachea
4
intestine
4
mouth
4
spinal cord
3
uterus
2
gonad
2
stomach
1
adipose tissue
1
adrenal gland
1
limb
1
pericardium
1
testis
1
thyroid gland
Project
1469
AMP
333
ENCODE
59
T1D
19
LungMap
Genome assembly (visualization)
1394
hg19
362
GRCh38
files.file_type!
tsv
BIOSAMPLE
TYPE
1469 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
histone modifications
chromatin state
binding sites
variant allelic effects
eQTL
gene expression
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
1
17
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
27
14
13
CD8-positive, alpha-beta T cell
7
3
2
30
1
B cell
14
10
2
8
CD4-positive, alpha-beta memory T cell
14
9
9
CD14-positive monocyte
8
19
4
CD8-positive, alpha-beta memory T cell
8
7
7
hepatocyte
1
2
7
4
1
1
2
4
endothelial cell of umbilical vein
6
4
2
5
2
1
mononuclear cell
7
6
6
1
foreskin keratinocyte
11
4
4
regulatory T cell
5
3
4
1
3
1
2
trophoblast cell
7
5
1
1
4
T cell
4
4
1
4
2
2
T-helper 1 cell
6
3
3
3
1
fibroblast of lung
6
4
4
2
foreskin fibroblast
6
2
1
2
1
4
natural killer cell
6
4
1
1
3
1
skeletal muscle myoblast
4
2
2
1
3
2
1
1
neutrophil
4
3
2
2
2
1
1
osteoblast
2
2
5
2
1
3
T-helper 17 cell
5
3
2
3
1
T-helper 2 cell
5
3
2
3
1
CD4-positive, alpha-beta T cell
8
2
3
endothelial cell
4
1
2
2
1
1
2
keratinocyte
3
3
2
3
1
1
macrophage
1
1
3
7
1
mammary epithelial cell
3
1
1
3
1
4
neurosphere
7
3
3
bronchial epithelial cell
4
2
1
1
2
2
fibroblast of dermis
4
4
3
1
fibroblast
2
1
6
2
mammary gland epithelial cell
3
3
3
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
4
1
2
1
1
1
1
dermis blood vessel endothelial cell
6
2
2
endothelial cell of hepatic sinusoid
4
6
kidney tubule cell
3
2
2
2
1
epithelial cell of prostate
4
3
2
fibroblast of cardiac tissue
3
3
3
mature neutrophil
1
7
1
naive T cell
3
3
3
pancreatic ductal cell
1
3
2
1
1
1
retinal pigment epithelial cell
2
1
2
1
1
2
skeletal muscle satellite cell
2
1
2
2
2
epithelial cell of proximal tubule
2
1
1
1
1
1
1
fibroblast of breast
4
2
2
fibroblast of mammary gland
2
1
1
1
1
2
fibroblast of pulmonary artery
2
1
1
1
1
2
fibroblast of villous mesenchyme
2
1
1
1
1
2
glomerular endothelial cell
2
1
2
1
1
1
kidney glomerular epithelial cell
2
1
2
1
1
1
myoepithelial cell of mammary gland
4
2
2
renal cortical epithelial cell
2
1
2
1
1
1
smooth muscle cell
3
2
1
1
1
CD1c-positive myeloid dendritic cell
2
1
1
1
1
1
astrocyte
2
2
1
1
1
cardiac muscle cell
2
1
1
1
2
choroid plexus epithelial cell
2
1
1
1
1
1
glomerular visceral epithelial cell
2
1
2
1
1
hepatic stellate cell
1
1
2
1
1
1
kidney epithelial cell
2
1
1
1
1
1
mesenchymal stem cell
1
2
1
1
1
1
pancreatic beta cell
1
4
1
1
pulmonary artery endothelial cell
2
1
1
1
1
1
skin fibroblast
2
2
1
2
T-cell
4
2
astrocyte of the cerebellum
2
1
1
1
1
astrocyte of the hippocampus
2
1
1
1
1
dermis lymphatic vessel endothelial cell
2
2
2
epithelial cell of esophagus
2
1
1
2
erythroblast
2
2
2
foreskin melanocyte
4
1
1
olfactory receptor cell
6
pancreatic alpha cell
1
3
1
1
peripheral blood mononuclear cell
4
1
1
skeletal muscle cell
2
1
1
1
1
skeletal muscle fiber
2
2
2
smooth muscle cell of the brain vasculature
2
1
1
1
1
cardiac fibroblast
3
2
CD14-positive, CD16-negative classical monocyte
5
alternatively activated macrophage
1
4
brain microvascular endothelial cell
2
1
1
1
fibroblast of peridontal ligament
2
1
1
1
fibroblast of the aortic adventitia
2
1
1
1
iris pigment epithelial cell
2
1
1
1
kidney capillary endothelial cell
1
1
1
1
1
lung microvascular endothelial cell
3
1
1
non-pigmented ciliary epithelial cell
2
1
1
1
pancreatic acinar cell
1
2
1
1
pancreatic delta cell
1
2
1
1
tracheal epithelial cell
1
2
2
type I muscle cell
2
1
1
1
type II muscle cell
2
1
1
1
acute myeloid leukemia cell
2
2
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the spinal cord
2
1
1
cardiac fibroblast
3
1
fibroblast of gingiva
2
1
1
fibroblast of the conjunctiva
2
1
1
glutamatergic neuron
4
inflammatory macrophage
1
3
myofibroblast cell
1
3
naive thymus-derived CD8-positive, alpha-beta T cell
1
2
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
stromal cell of bone marrow
2
1
1
Ishikawa
1
1
1
T follicular helper cell
2
1
Th1 cell
1
1
1
Th17 cell
1
1
1
adipocyte
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
enterocyte
3
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
leukocyte
2
1
luminal epithelial cell of mammary gland
1
1
1
mammary stem cell
1
1
1
mast cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cell
1
2
neoplastic cell
1
1
1
pancreatic polypeptide-secreting cell
1
1
1
pericyte cell
1
1
1
peripheral blood stem cell
1
1
1
plasma cell
1
1
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
smooth muscle cell of the coronary artery
1
1
1
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive helper T cell
2
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
Th2 cell
1
1
activated CD4-positive, alpha-beta T cell
1
1
basal cell
2
cardiac muscle myoblast
1
1
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
1
1
columnar chondrocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of coronary artery
1
1
erythroid progenitor cell
1
1
gamma-delta T cell
2
glial cell
1
1
goblet cell
2
head and neck squamous cell carcinoma
1
1
leukemic stem cell
1
1
mantle cell lymphoma cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
meso-epithelial cell
1
1
naive regulatory T cell
2
neural cell
1
1
neuronal stem cell
1
1
pancreatic endocrine cell
1
1
pancreatic stellate cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
renal proximal tubule cell
1
1
small cell ovarian carcinoma cell
1
1
somatic muscle myotube
1
1
vascular associated smooth muscle cell
2
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD8-positive, alpha-beta T cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
colorectal cancer
1
cortical cell of adrenal gland
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
fat cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gabaergic neuron
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature eosinophil
1
megakaryocyte
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesangial cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
mesothelial cell
1
microglial cell
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
naive B cel
1
naive t cell
1
neural progenitor cell
1
neuron
1
neutrophil progenitor cell
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic A cell
1
pancreatic cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
pericardium fibroblast
1
peripheral blood
1
plasmacytoid dendritic cell
1
progenitor cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
thyroid follicular cell
1
type B pancreatic cell
1
type II pneumocyte
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
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