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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1246
target gene predictions
977
histone modifications
817
binding sites
672
accessible chromatin
512
gene expression
166
eQTL
140
variant allelic effects
75
chromatin state
74
Fine-mapped variants
48
differential activity
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
1
pQTL
1
representative DNase hypersensitivity sites
Date released
2590
February, 2021
1678
September, 2022
384
May, 2021
378
February, 2024
289
June, 2020
152
May, 2020
128
March, 2020
123
August, 2021
106
January, 2022
101
October, 2022
83
January, 2020
64
February, 2020
61
March, 2023
56
January, 2021
49
May, 2022
44
November, 2022
35
August, 2017
32
February, 2023
30
March, 2024
13
November, 2019
9
August, 2018
9
October, 2019
5
September, 2023
3
November, 2020
3
September, 2018
2
January, 2018
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
5570
bed bed3+
bed bed9
617
tsv
305
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6385
Homo sapiens
Biosample type
2164
cell line
2161
tissue
1672
primary cell
430
in vitro differentiated cells
4
stem cell
Organ
608
epithelium
432
kidney
400
brain
345
connective tissue
293
musculature of body
244
pancreas
229
lung
215
intestine
199
heart
194
limb
193
bodily fluid
190
vasculature
186
embryo
184
blood
160
skin of body
152
blood vessel
137
liver
135
large intestine
110
extraembryonic component
96
eye
87
stomach
81
adipose tissue
77
uterus
74
bone element
67
mammary gland
65
prostate gland
62
artery
61
small intestine
55
placenta
54
lymph node
54
penis
51
ureter
49
adrenal gland
40
gonad
37
thymus
35
spinal cord
34
esophagus
28
spleen
22
testis
21
nerve
19
lymphoid tissue
19
vein
17
ovary
17
thyroid gland
15
mouth
15
skeleton
13
pituitary gland
11
bone marrow
11
breast
11
bronchus
10
lymphatic vessel
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
6373
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
9
community
5
ITG
Genome assembly (visualization)
5738
hg19
674
GRCh38
4
hg18
files.file_type!
bed bed9
BIOSAMPLE
TYPE
6433 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
accessible chromatin
gene expression
eQTL
variant allelic effects
chromatin state
Fine-mapped variants
differential activity
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
2
1
8
A549
21
19
1
2
1
K562
7
23
1
2
1
1
EndoC_BH1
1
1
1
8
8
1
1
+ See 765 more…
tissue
heart
37
20
1
1
5
3
2
stomach
40
21
1
3
1
1
kidney
29
14
2
1
10
7
1
1
brain
29
16
3
1
2
1
2
1
lung
33
17
1
1
+ See 260 more…
primary cell
monocyte
2
86
1
18
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
4
30
3
3
1
common myeloid progenitor, CD34-positive
27
14
hepatocyte
1
2
4
1
7
13
2
B cell
14
10
2
2
+ See 326 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
4
1
4
cardiomyocytes
11
embryonic stem cell
1
1
1
6
+ See 121 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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