Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
172
candidate regulatory elements
112
target gene predictions
109
chromatin state
66
accessible chromatin
55
histone modifications
45
Fine-mapped variants
36
eQTL
35
binding sites
35
gene expression
28
variant allelic effects
4
differential activity
3
caQTL
Date released
267
September, 2022
165
February, 2021
51
March, 2020
40
January, 2020
30
May, 2020
27
June, 2020
23
February, 2020
22
January, 2022
18
February, 2024
15
May, 2021
8
October, 2022
7
August, 2017
5
May, 2019
5
November, 2019
4
February, 2023
4
March, 2023
3
March, 2024
3
September, 2023
2
October, 2019
1
August, 2021
Available data
469
bed bed3+
102
bed bed9
97
tsv
40
bigWig
14
bigBed bed9
2
txt
Organism
699
Homo sapiens
Biosample type
467
tissue
141
primary cell
85
cell line
6
in vitro differentiated cells
1
stem cell
Organ
638
epithelium
509
kidney
466
brain
384
connective tissue
364
musculature of body
299
lung
270
intestine
245
heart
244
limb
237
pancreas
222
vasculature
218
bodily fluid
213
embryo
207
blood
194
skin of body
179
blood vessel
168
large intestine
151
liver
143
extraembryonic component
110
stomach
105
eye
89
adipose tissue
86
bone element
81
mammary gland
81
uterus
80
small intestine
78
prostate gland
71
placenta
70
artery
64
penis
64
ureter
63
adrenal gland
62
lymph node
48
gonad
48
thymus
43
spinal cord
41
esophagus
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
vein
21
ovary
21
thyroid gland
19
mouth
18
skeleton
13
breast
13
bronchus
13
pituitary gland
12
lymphatic vessel
10
bone marrow
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
700
AMP
35
KPMP
6
ENCODE
3
LungMap
Genome assembly (visualization)
628
hg19
234
GRCh38
BIOSAMPLE
TYPE
700 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
histone modifications
Fine-mapped variants
eQTL
binding sites
gene expression
variant allelic effects
differential activity
caQTL
tissue
brain
29
16
18
2
3
2
1
1
1
spleen
15
8
6
2
1
1
1
caudate nucleus
5
3
4
2
1
3
2
1
1
coronary artery
3
3
3
3
3
2
1
2
1
tibial artery
3
2
3
3
3
2
1
2
+ See 66 more…
primary cell
endothelial cell of umbilical vein
6
4
5
2
2
1
endothelial cell of hepatic sinusoid
4
6
4
dermis blood vessel endothelial cell
6
2
2
fibroblast of pulmonary artery
2
1
1
1
1
2
choroid plexus epithelial cell
2
1
1
1
1
1
+ See 21 more…
cell line
SK-N-DZ
4
2
2
1
1
SK-N-SH
4
3
2
1
pituitary stalk
10
SK-N-MC
2
1
1
1
1
2
BE(2)-C
1
1
1
1
1
2
+ See 12 more…
in vitro differentiated cells
dermis microvascular lymphatic vessel endothelial cell
1
1
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download