Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
51
candidate regulatory elements
36
target gene predictions
31
chromatin state
26
accessible chromatin
25
gene expression
21
binding sites
21
histone modifications
9
eQTL
5
variant allelic effects
4
differential activity
3
Fine-mapped variants
1
caQTL
Date released
88
September, 2022
55
February, 2021
30
February, 2024
11
June, 2020
10
August, 2021
10
March, 2020
5
May, 2021
4
March, 2023
3
August, 2017
3
January, 2020
3
May, 2020
2
February, 2020
2
January, 2022
2
May, 2022
1
July, 2020
1
March, 2024
1
November, 2019
1
October, 2022
1
September, 2018
Available data
162
bed bed3+
29
tsv
28
bed bed9
19
bigWig
3
csv
1
bam
1
bigBed bed9
Organism
233
Homo sapiens
Biosample type
81
cell line
73
tissue
68
primary cell
11
in vitro differentiated cells
Organ
638
epithelium
509
kidney
466
brain
384
connective tissue
364
musculature of body
299
lung
270
intestine
245
heart
244
limb
237
pancreas
222
vasculature
218
bodily fluid
213
embryo
207
blood
194
skin of body
179
blood vessel
168
large intestine
151
liver
143
extraembryonic component
110
stomach
105
eye
89
adipose tissue
86
bone element
81
mammary gland
81
uterus
80
small intestine
78
prostate gland
71
placenta
70
artery
64
penis
64
ureter
63
adrenal gland
62
lymph node
48
gonad
48
thymus
43
spinal cord
41
esophagus
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
vein
21
ovary
21
thyroid gland
19
mouth
18
skeleton
13
breast
13
bronchus
13
pituitary gland
12
lymphatic vessel
10
bone marrow
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
233
AMP
5
ENCODE
Genome assembly (visualization)
199
hg19
70
GRCh38
2
hg18
BIOSAMPLE
TYPE
233 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
gene expression
binding sites
histone modifications
eQTL
variant allelic effects
differential activity
Fine-mapped variants
caQTL
cell line
HepG2
2
3
2
2
3
5
22Rv1
4
2
2
1
1
LNCaP clone FGC
3
2
2
PC-3
2
1
1
1
1
1
RWPE1
2
1
1
1
1
1
+ See 9 more…
tissue
liver
13
10
9
4
1
1
2
7
1
1
prostate gland
4
2
2
1
2
2
1
right lobe of liver
2
1
1
1
1
3
prostate
1
primary cell
hepatocyte
1
2
1
7
13
1
4
2
endothelial cell of hepatic sinusoid
4
4
6
epithelial cell of prostate
4
3
2
hepatic stellate cell
1
1
1
2
1
1
1
pancreatic endothelial cell
1
3
+ See 2 more…
in vitro differentiated cells
hepatocyte
2
1
1
olfactory neurosphere cell line
1
1
1
1
hepatocyte(AFP)
3
See all biosamples
Download