Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
543
gene expression
407
candidate regulatory elements
323
target gene predictions
254
accessible chromatin
203
histone modifications
152
differential activity
132
binding sites
88
variant allelic effects
43
chromatin state
9
eQTL
5
caQTL
5
hQTL
3
meQTL
3
sQTL
2
other
1
representative DNase hypersensitivity sites
Date released
644
February, 2021
396
September, 2022
286
September, 2023
198
May, 2021
153
February, 2024
92
May, 2020
74
June, 2020
56
January, 2021
55
March, 2023
47
August, 2021
34
May, 2022
29
October, 2022
27
November, 2022
19
April, 2020
17
March, 2020
16
February, 2020
11
August, 2017
9
August, 2018
2
January, 2020
1
February, 2023
1
January, 2022
1
July, 2020
1
June, 2021
1
March, 2024
1
November, 2019
1
November, 2020
1
October, 2019
Available data
1419
bed bed3+
655
tsv
135
bigWig
108
txt
27
bed bed9+
24
csv
16
bigBed narrowPeak
5
bed bed9
5
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2127
Homo sapiens
Biosample type
cell line
tissue
1762
primary cell
405
in vitro differentiated cells
4
stem cell
Organ
626
epithelium
291
kidney
238
connective tissue
124
vasculature
106
pancreas
82
skin of body
80
blood vessel
41
embryo
41
penis
37
musculature of body
36
mammary gland
33
extraembryonic component
33
liver
27
brain
25
artery
21
eye
21
lung
18
heart
15
vein
14
lymphatic vessel
12
bone element
12
bronchus
11
bone marrow
9
blood
9
bodily fluid
8
prostate gland
7
placenta
5
esophagus
5
trachea
4
intestine
3
mouth
3
nose
3
spinal cord
3
uterus
2
adipose tissue
2
stomach
1
adrenal gland
1
gonad
1
limb
1
pericardium
1
thyroid gland
Project
1816
AMP
281
KPMP
57
T1D
19
LungMap
Genome assembly (visualization)
2196
hg19
GRCh38
biosample_type!
cell line
tissue
assembly!
GRCh38
BIOSAMPLE
TYPE
2173 results
search-icon
table-tab-icon
Clear Filters
gene expression
candidate regulatory elements
target gene predictions
accessible chromatin
histone modifications
differential activity
binding sites
variant allelic effects
chromatin state
eQTL
caQTL
hQTL
meQTL
sQTL
other
representative DNase hypersensitivity sites
primary cell
CD8-positive, alpha-beta T cell
3
7
4
3
30
1
common myeloid progenitor, CD34-positive
27
14
monocyte
15
2
5
2
1
1
2
1
1
B cell
2
14
10
3
CD14-positive monocyte
8
19
+ See 384 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
1
19
10
1
1
1
adipocyte
1
4
6
4
1
1
4
neural progenitor cell
7
5
5
2
embryonic stem cell
1
6
1
1
5
cardiomyocytes
11
+ See 120 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download