Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
552
gene expression
525
accessible chromatin
412
target gene predictions
407
candidate regulatory elements
304
histone modifications
242
chromatin state
152
differential activity
138
binding sites
88
variant allelic effects
44
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
2
other
1
representative DNase hypersensitivity sites
Date released
645
February, 2021
592
September, 2022
333
November, 2021
295
May, 2021
286
September, 2023
184
February, 2024
93
May, 2020
74
June, 2020
73
August, 2021
January, 2021
55
March, 2023
40
January, 2022
40
May, 2022
31
October, 2022
27
November, 2022
26
January, 2020
19
April, 2020
17
March, 2020
16
February, 2020
11
August, 2017
9
August, 2018
9
October, 2019
5
February, 2023
3
November, 2019
3
November, 2020
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1892
bed bed3+
664
tsv
394
bigWig
204
bed bed9
108
txt
27
bed bed9+
24
csv
16
bigBed narrowPeak
9
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2843
Homo sapiens
Biosample type
tissue
2413
primary cell
cell line
470
in vitro differentiated cells
4
stem cell
Organ
825
epithelium
330
connective tissue
310
kidney
171
vasculature
114
blood vessel
109
pancreas
109
skin of body
70
liver
53
embryo
52
musculature of body
49
mammary gland
47
penis
45
extraembryonic component
40
brain
34
lung
32
heart
29
artery
29
eye
23
intestine
20
vein
19
lymphatic vessel
16
bronchus
12
bone element
11
adrenal gland
11
bone marrow
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
nose
4
small intestine
4
spinal cord
3
thyroid gland
2
adipose tissue
2
ovary
1
limb
1
pericardium
1
testis
1
thymus
Project
2252
AMP
333
ENCODE
281
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
2140
hg19
772
GRCh38
biosample_type!
cell line
tissue
month_released!
January, 2021
BIOSAMPLE
TYPE
2889 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
differential activity
binding sites
variant allelic effects
eQTL
caQTL
hQTL
meQTL
sQTL
other
representative DNase hypersensitivity sites
primary cell
monocyte
15
17
1
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
3
3
4
7
30
1
B cell
2
6
10
14
8
endothelial cell
9
14
6
1
2
2
1
2
+ See 444 more…
in vitro differentiated cells
neural progenitor cell
7
10
5
5
15
4
hematopoietic multipotent progenitor cell
1
1
10
19
1
10
1
adipocyte
1
4
6
4
1
6
1
embryonic stem cell
6
1
1
5
1
cardiomyocytes
11
+ See 121 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download