Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
135
accessible chromatin
113
target gene predictions
95
candidate regulatory elements
85
gene expression
59
chromatin state
38
differential activity
36
eQTL
29
binding sites
26
variant allelic effects
22
histone modifications
11
Fine-mapped variants
2
caQTL
2
pQTL
2
sQTL
2
variant to gene
Date released
146
September, 2022
121
February, 2021
68
November, 2021
45
March, 2023
41
February, 2024
31
May, 2021
20
January, 2021
19
August, 2021
18
June, 2020
17
March, 2020
17
September, 2023
15
May, 2020
14
January, 2020
12
October, 2022
11
February, 2020
10
August, 2017
10
January, 2022
8
October, 2019
7
August, 2018
7
November, 2022
3
April, 2020
3
May, 2022
3
November, 2020
2
January, 2018
2
May, 2024
2
September, 2018
1
April, 2019
1
February, 2023
1
June, 2021
1
November, 2019
Available data
436
bed bed3+
123
tsv
107
bigWig
48
bed bed9
14
bigBed narrowPeak
7
txt
4
bigBed bed9
3
bam
3
bed gappedPeak
3
csv
3
xls
Organism
657
Homo sapiens
Biosample type
396
primary cell
207
tissue
cell line
53
in vitro differentiated cells
1
stem cell
Organ
906
epithelium
611
kidney
429
connective tissue
389
brain
358
musculature of body
255
intestine
255
vasculature
246
heart
243
pancreas
237
limb
215
lung
198
blood vessel
143
extraembryonic component
140
large intestine
134
skin of body
128
liver
119
stomach
99
eye
88
embryo
86
adipose tissue
84
small intestine
73
adrenal gland
71
artery
70
placenta
64
ureter
51
mammary gland
49
penis
49
thymus
45
esophagus
43
gonad
40
spinal cord
36
bone element
34
spleen
25
nerve
25
prostate gland
23
ovary
23
thyroid gland
21
vein
19
lymphatic vessel
19
testis
18
lymphoid tissue
18
skeleton
18
uterus
16
bronchus
15
mouth
13
bodily fluid
13
bone marrow
13
breast
12
blood
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
3
pituitary gland
1
pericardium
Project
545
AMP
68
ENCODE
20
T1D
15
KPMP
4
ITG
3
LungMap
2
community
Genome assembly (visualization)
514
hg19
174
GRCh38
2
hg18
biosample_type!
cell line
BIOSAMPLE
TYPE
657 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
gene expression
chromatin state
differential activity
eQTL
binding sites
variant allelic effects
histone modifications
Fine-mapped variants
caQTL
pQTL
sQTL
variant to gene
primary cell
fibroblast
16
4
2
1
6
pericyte cell
10
10
1
1
pancreatic ductal cell
6
3
3
3
1
1
2
pancreatic beta cell
8
3
3
3
1
osteoblast
5
2
2
2
1
3
2
+ See 57 more…
tissue
islet of Langerhans
6
1
11
3
13
2
1
1
2
2
2
adipose tissue
2
8
7
3
6
4
1
1
body of pancreas
5
8
2
4
1
1
3
pancreas
5
5
5
3
1
1
1
1
subcutaneous adipose tissue
2
2
5
1
1
6
1
3
+ See 16 more…
in vitro differentiated cells
adipocyte
4
6
4
1
6
1
1
mesenchymal stem cell
1
3
3
2
1
1
chondrocyte
5
pancreatic ductal cell
3
fibroblast
1
1
+ See 9 more…
stem cell
mesenchymal stem cell
1
See all biosamples
Download