Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
63
accessible chromatin
59
target gene predictions
53
candidate regulatory elements
42
gene expression
32
chromatin state
30
differential activity
15
eQTL
11
histone modifications
10
variant allelic effects
7
binding sites
5
Fine-mapped variants
2
sQTL
2
variant to gene
Date released
86
September, 2022
53
February, 2021
45
March, 2023
25
February, 2024
21
May, 2021
20
January, 2021
20
November, 2021
9
March, 2020
8
August, 2021
8
June, 2020
7
August, 2018
6
October, 2019
5
May, 2020
4
August, 2017
4
January, 2020
4
January, 2022
2
February, 2020
1
April, 2019
1
January, 2018
1
June, 2021
1
November, 2019
Available data
208
bed bed3+
69
tsv
58
bigWig
27
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
csv
3
xls
2
bigBed bed9
Organism
331
Homo sapiens
Biosample type
cell line
149
tissue
148
primary cell
33
in vitro differentiated cells
1
stem cell
Organ
906
epithelium
611
kidney
427
connective tissue
389
brain
358
musculature of body
255
intestine
255
vasculature
246
heart
243
pancreas
237
limb
215
lung
198
blood vessel
143
extraembryonic component
140
large intestine
134
skin of body
128
liver
119
stomach
99
eye
88
embryo
86
adipose tissue
84
small intestine
73
adrenal gland
71
artery
70
placenta
64
ureter
51
mammary gland
49
penis
49
thymus
45
esophagus
43
gonad
40
spinal cord
36
bone element
34
spleen
25
nerve
25
prostate gland
23
ovary
23
thyroid gland
21
vein
19
lymphatic vessel
19
testis
18
lymphoid tissue
18
skeleton
18
uterus
16
bronchus
15
mouth
13
bodily fluid
13
bone marrow
13
breast
12
blood
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
3
pituitary gland
1
pericardium
Project
291
AMP
20
ENCODE
20
T1D
Genome assembly (visualization)
249
hg19
76
GRCh38
biosample_type!
cell line
BIOSAMPLE
TYPE
331 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
gene expression
chromatin state
differential activity
eQTL
histone modifications
variant allelic effects
binding sites
Fine-mapped variants
sQTL
variant to gene
tissue
islet of Langerhans
6
1
11
3
13
1
1
2
2
2
2
body of pancreas
5
8
2
4
1
1
3
pancreas
5
5
5
3
1
1
1
1
chorionic villus
4
8
4
endocrine pancreas
4
7
4
+ See 12 more…
primary cell
pancreatic ductal cell
6
3
3
3
2
1
1
pancreatic beta cell
8
3
3
3
1
trophoblast cell
1
5
7
4
1
pancreatic alpha cell
7
3
3
3
1
pancreatic acinar cell
6
3
3
3
1
+ See 16 more…
in vitro differentiated cells
endodermal cell
2
4
2
mesodermal cell
1
4
1
1
trophoblast cell
2
2
1
ectodermal cell
1
2
1
cardiac mesoderm primordium
1
1
1
+ See 4 more…
stem cell
H1-hESC
1
See all biosamples
Download