Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
251
gene expression
185
accessible chromatin
119
target gene predictions
93
candidate regulatory elements
92
differential activity
51
chromatin state
44
binding sites
41
variant allelic effects
26
histone modifications
2
caQTL
1
eQTL
Date released
189
February, 2021
155
September, 2023
145
September, 2022
130
November, 2021
66
February, 2024
38
March, 2023
33
May, 2021
23
August, 2021
23
June, 2020
20
January, 2021
15
May, 2020
14
January, 2020
8
February, 2020
7
April, 2020
7
October, 2022
6
August, 2018
6
March, 2020
6
November, 2022
5
October, 2019
3
August, 2017
2
February, 2023
2
May, 2022
1
July, 2020
1
November, 2019
Available data
508
bed bed3+
322
tsv
158
bigWig
78
txt
48
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
905
Homo sapiens
Biosample type
826
primary cell
tissue
53
cell line
26
in vitro differentiated cells
Organ
888
epithelium
363
connective tissue
351
kidney
214
bodily fluid
204
blood
182
vasculature
180
embryo
179
skin of body
163
pancreas
130
lung
120
blood vessel
117
brain
98
liver
85
mammary gland
70
uterus
69
musculature of body
67
bone element
63
prostate gland
62
lymph node
62
penis
57
intestine
48
extraembryonic component
41
heart
40
large intestine
39
eye
33
artery
22
vein
21
lymphatic vessel
16
bronchus
13
bone marrow
13
placenta
11
adrenal gland
11
gonad
11
stomach
10
esophagus
10
pituitary gland
8
limb
8
mouth
8
testis
7
spinal cord
6
lymphoid tissue
5
adipose tissue
5
trachea
4
nose
4
small intestine
3
thyroid gland
2
ovary
1
pericardium
1
thymus
Project
591
AMP
155
KPMP
130
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
558
hg19
227
GRCh38
biosample_type!
tissue
BIOSAMPLE
TYPE
905 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
differential activity
chromatin state
binding sites
variant allelic effects
histone modifications
caQTL
eQTL
primary cell
endothelial cell
9
15
7
2
2
1
2
1
hepatocyte
13
8
3
1
1
1
2
4
epithelial cell of proximal tubule
16
1
1
2
1
1
1
glomerular endothelial cell
14
2
1
2
1
1
endothelial cell of umbilical vein
2
4
6
5
2
1
+ See 149 more…
cell line
EndoC_BH1
8
8
1
3
1
WERI-Rb-1
1
1
2
1
2
1
keratinocyte
3
1
choroid plexus epithelial cell
1
1
1
colon epithelial cell
1
1
1
+ See 9 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
1
2
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 4 more…
See all biosamples
Download