Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
675
binding sites
673
histone modifications
454
target gene predictions
387
candidate regulatory elements
228
accessible chromatin
226
chromatin state
95
gene expression
10
differential activity
10
eQTL
10
variant allelic effects
1
representative DNase hypersensitivity sites
Date released
1472
February, 2021
620
September, 2022
200
February, 2024
169
June, 2020
101
May, 2021
70
October, 2022
40
August, 2021
18
November, 2022
17
March, 2020
13
January, 2022
9
August, 2017
9
March, 2023
9
May, 2020
7
May, 2022
4
January, 2020
4
September, 2023
3
November, 2019
2
October, 2019
1
February, 2023
1
March, 2024
Available data
2428
bed bed3+
210
bed bed9
97
tsv
24
csv
16
bigWig
7
bed bed9+
5
bigBed bed9
Organism
2769
Homo sapiens
Biosample type
2637
tissue
2459
primary cell
2299
cell line
470
in vitro differentiated cells
4
stem cell
Organ
205
bodily fluid
195
blood
157
embryo
96
lung
81
brain
81
connective tissue
79
skin of body
69
epithelium
65
uterus
62
lymph node
53
bone element
prostate gland
42
kidney
39
mammary gland
37
pancreas
35
liver
34
intestine
34
large intestine
21
penis
19
musculature of body
16
eye
13
vasculature
10
heart
10
pituitary gland
8
extraembryonic component
7
gonad
7
limb
7
testis
6
blood vessel
6
lymphoid tissue
4
adipose tissue
4
artery
4
lymphatic vessel
4
mouth
4
nose
3
placenta
3
spinal cord
2
vein
Project
2760
AMP
9
community
Genome assembly (visualization)
2644
hg19
421
GRCh38
1
hg18
organ_slims!
prostate gland
BIOSAMPLE
TYPE
2769 results
search-icon
table-tab-icon
Clear Filters
binding sites
histone modifications
target gene predictions
candidate regulatory elements
accessible chromatin
chromatin state
gene expression
differential activity
eQTL
variant allelic effects
representative DNase hypersensitivity sites
cell line
HeLa-S3
1
55
5
3
A549
2
1
19
21
1
18
H1-hESC
2
1
39
1
1
1
8
K562
2
1
23
7
1
7
MCF-7
3
2
6
9
1
5
+ See 756 more…
in vitro differentiated cells
neural progenitor cell
15
5
5
10
4
7
hematopoietic multipotent progenitor cell
1
1
10
19
1
10
1
adipocyte
1
1
6
4
4
6
1
embryonic stem cell
1
1
1
6
5
cardiomyocytes
11
+ See 121 more…
See all biosamples
Download