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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
681
binding sites
678
histone modifications
464
target gene predictions
406
candidate regulatory elements
235
chromatin state
232
accessible chromatin
95
gene expression
10
differential activity
10
eQTL
10
variant allelic effects
1
representative DNase hypersensitivity sites
Date released
214
September, 2022
168
February, 2024
65
May, 2021
12
March, 2020
4
September, 2023
1
May, 2020
Available data
464
bed bed3+
Organism
464
Homo sapiens
Biosample type
518
tissue
399
cell line
372
primary cell
65
in vitro differentiated cells
3
stem cell
Organ
71
embryo
57
bodily fluid
55
blood
55
uterus
26
lung
24
brain
15
connective tissue
15
skin of body
10
bone element
10
pituitary gland
10
prostate gland
9
lymph node
8
intestine
8
large intestine
8
mammary gland
7
kidney
6
liver
5
musculature of body
5
pancreas
4
penis
3
epithelium
3
extraembryonic component
2
lymphoid tissue
1
adipose tissue
1
eye
1
gonad
1
limb
1
mouth
1
nose
1
placenta
1
testis
Project
464
AMP
Genome assembly (visualization)
464
hg19
168
GRCh38
BIOSAMPLE
TYPE
464 results
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Clear Filters
target gene predictions
cell line
HeLa-S3
55
H1-hESC
39
K562
23
A549
19
HFFc6
19
pituitary stalk
10
GM12878
8
H9
8
lymphocyte
7
MCF-7
6
CyT49
4
HUES8
4
iPSC derived cell line
4
HCT116
3
HepG2
3
SK-N-SH
3
endometrium adenocarcinoma
3
immortal human breast epithelial cell line cell
3
22Rv1
2
A673
2
BJAB cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T47D
2
THP-1
2
U937
2
iPS DF 19.11
2
8988T
1
A172
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
C4-2B
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
EndoC_BH1
1
G401
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12875
1
GM12891
1
GM12892
1
GM18486
1
GM18505
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM23248
1
GM23338
1
H4
1
H54
1
HCT-116 cell
1
HEK293
1
HEK293T
1
HK-2 cell
1
HL-60
1
HPDE6-E6E7
1
HS-27A
1
HS-5
1
HT1080
1
HTR-8/Svneo
1
HUES48
1
HUES6
1
HUES64
1
HuH-7
1
HuH-7.5
1
KBM-7
1
KMS-11
1
KOPT-K1
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LNCAP
1
Loucy
1
M059J
1
MDA-MB-231 cell
1
MG63
1
NB4
1
NCCIT cell
1
NCI-H226 cell
1
NCI-H460 cell
1
NCI-H929
1
NT2-D1 cell
1
OCI-LY1
1
OCI-LY3
1
PC-3
1
RCC 7860
1
RPMI7951
1
RPMI8226
1
RWPE1
1
RWPE2
1
SJCRH30
1
SJSA1
1
SK-MEL-5
1
SK-N-MC
1
SU-DHL-6
1
SW480
1
UCSF-4
1
VCaP cell
1
WERI-Rb-1
1
WI38
1
colon carcinoma
1
colon epithelial cell
1
fibroblast cell line
1
foreskin fibroblast
1
iPS DF 19.7
1
iPS DF 4.7 Cell Line
1
iPS DF 6.9
1
iPS-11a
1
iPS-15b
1
iPS-18a
1
iPS-18c
1
iPS-20b
1
iPS-NIHi11
1
iPS-NIHi7
1
induced pluripotent stem cell
1
macrophage
1
medulloblastoma
1
monocyte
1
renal cell carcinoma
1
urothelium cell line
1
in vitro differentiated cells
hematopoietic multipotent progenitor cell
10
adipocyte
6
dendritic cell
6
neural progenitor cell
5
cardiomyocytes (cardiac muscle cell)
3
mesenchymal stem cell
3
bipolar neuron
2
endodermal cell
2
lymphocyte of B lineage (iPSC)
2
mesendoderm
2
muscle cell
2
trophoblast cell
2
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
cardiac mesoderm primordium
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
ectodermal cell
1
embryonic stem cell
1
hepatocyte
1
islet precursor cell
1
mesodermal cell
1
myotube
1
neural cell
1
neuron
1
neuronal stem cell
1
olfactory neurosphere cell line
1
skeletal muscle myoblast
1
smooth muscle cell
1
white adipose cell
1
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