Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
680
binding sites
677
histone modifications
459
target gene predictions
402
candidate regulatory elements
232
chromatin state
224
accessible chromatin
84
gene expression
10
eQTL
9
variant allelic effects
7
differential activity
1
representative DNase hypersensitivity sites
Date released
1490
February, 2021
638
September, 2022
197
February, 2024
173
June, 2020
86
May, 2021
70
October, 2022
40
August, 2021
18
November, 2022
16
March, 2020
13
January, 2022
9
August, 2017
8
May, 2020
7
March, 2023
7
May, 2022
4
January, 2020
4
September, 2023
2
November, 2019
2
October, 2019
1
March, 2024
Available data
2452
bed bed3+
216
bed bed9
85
tsv
21
csv
15
bigWig
7
bed bed9+
5
bigBed bed9
Organism
2785
Homo sapiens
Biosample type
2538
tissue
2343
primary cell
2318
cell line
467
in vitro differentiated cells
4
stem cell
Organ
205
bodily fluid
195
blood
157
embryo
96
lung
81
brain
81
connective tissue
79
skin of body
69
epithelium
65
uterus
62
lymph node
53
bone element
53
prostate gland
42
kidney
39
mammary gland
pancreas
35
liver
34
intestine
34
large intestine
21
penis
19
musculature of body
16
eye
13
vasculature
10
heart
10
pituitary gland
8
extraembryonic component
7
gonad
7
limb
7
testis
6
blood vessel
6
lymphoid tissue
4
adipose tissue
4
artery
4
lymphatic vessel
4
mouth
4
nose
3
placenta
3
spinal cord
2
vein
Project
2778
AMP
7
community
Genome assembly (visualization)
2674
hg19
426
GRCh38
1
hg18
organ_slims!
pancreas
BIOSAMPLE
TYPE
2785 results
search-icon
table-tab-icon
Clear Filters
binding sites
histone modifications
target gene predictions
candidate regulatory elements
chromatin state
accessible chromatin
gene expression
eQTL
variant allelic effects
differential activity
representative DNase hypersensitivity sites
cell line
HeLa-S3
1
55
5
3
A549
2
1
19
21
18
1
H1-hESC
2
1
39
1
1
1
8
K562
2
1
23
7
7
1
MCF-7
3
2
6
9
5
1
+ See 760 more…
in vitro differentiated cells
neural progenitor cell
15
5
5
4
10
7
hematopoietic multipotent progenitor cell
1
1
10
19
10
1
1
adipocyte
1
1
6
4
6
4
1
embryonic stem cell
1
1
1
5
6
cardiomyocytes
11
+ See 120 more…
See all biosamples
Download