Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
519
gene expression
479
accessible chromatin
375
target gene predictions
351
candidate regulatory elements
288
histone modifications
206
chromatin state
140
differential activity
114
binding sites
74
variant allelic effects
40
eQTL
9
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
1
representative DNase hypersensitivity sites
Date released
578
February, 2021
505
September, 2022
283
November, 2021
282
May, 2021
268
September, 2023
170
February, 2024
86
May, 2020
72
August, 2021
60
June, 2020
54
January, 2021
48
March, 2023
37
January, 2022
37
May, 2022
21
November, 2022
20
January, 2020
19
October, 2022
16
April, 2020
14
March, 2020
11
February, 2020
8
August, 2018
7
October, 2019
5
August, 2017
3
February, 2023
2
November, 2019
1
July, 2020
1
March, 2024
Available data
1690
bed bed3+
627
tsv
374
bigWig
174
bed bed9
101
txt
27
bed bed9+
24
csv
15
bigBed narrowPeak
8
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2563
Homo sapiens
Biosample type
2557
tissue
2321
cell line
2188
primary cell
420
in vitro differentiated cells
3
stem cell
Organ
845
epithelium
connective tissue
310
kidney
171
vasculature
129
pancreas
114
blood vessel
109
skin of body
70
liver
52
embryo
52
musculature of body
49
mammary gland
47
penis
45
extraembryonic component
39
brain
34
lung
32
heart
29
artery
29
eye
23
intestine
20
vein
19
lymphatic vessel
16
bronchus
14
bone element
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
nose
4
small intestine
4
spinal cord
3
thyroid gland
2
adipose tissue
2
ovary
1
limb
1
pericardium
1
testis
1
thymus
Project
1986
AMP
283
ENCODE
266
KPMP
57
T1D
16
LungMap
Genome assembly (visualization)
1907
hg19
678
GRCh38
organ_slims!
connective tissue
BIOSAMPLE
TYPE
2608 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
differential activity
binding sites
variant allelic effects
eQTL
caQTL
hQTL
meQTL
sQTL
other
representative DNase hypersensitivity sites
primary cell
monocyte
15
18
2
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
3
4
5
7
30
1
B cell
2
6
10
14
8
endothelial cell
9
15
7
1
2
2
1
2
+ See 400 more…
in vitro differentiated cells
neural progenitor cell
7
10
5
5
15
4
hematopoietic multipotent progenitor cell
1
1
10
19
1
10
1
embryonic stem cell
6
1
1
5
1
cardiomyocytes
11
extended pluripotent stem (EPS) cells
9
+ See 109 more…
See all biosamples
Download