Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1016
candidate regulatory elements
583
target gene predictions
555
chromatin state
266
accessible chromatin
184
gene expression
183
histone modifications
115
eQTL
74
Fine-mapped variants
binding sites
54
variant allelic effects
5
differential activity
4
variant to gene
3
pQTL
2
caQTL
2
sQTL
1
other
1
representative DNase hypersensitivity sites
Date released
1482
September, 2022
757
February, 2021
113
March, 2020
84
June, 2020
77
August, 2021
70
May, 2021
67
May, 2020
65
January, 2020
59
January, 2022
58
February, 2024
48
February, 2020
35
November, 2022
28
March, 2024
26
February, 2023
23
August, 2017
12
November, 2019
9
May, 2019
8
April, 2019
7
October, 2019
6
March, 2023
4
September, 2023
3
September, 2018
2
January, 2018
2
May, 2022
1
August, 2020
1
August, 2022
Available data
2123
bed bed3+
526
bed bed9
287
tsv
132
bigWig
36
bigBed bed9
24
csv
1
bam
Organism
3046
Homo sapiens
Biosample type
2616
tissue
2369
primary cell
1709
cell line
432
in vitro differentiated cells
4
stem cell
Organ
348
brain
307
musculature of body
298
kidney
235
limb
231
intestine
214
heart
180
lung
141
connective tissue
133
large intestine
114
pancreas
108
stomach
102
extraembryonic component
85
vasculature
84
adipose tissue
84
blood vessel
82
epithelium
80
small intestine
75
eye
64
liver
64
ureter
63
embryo
62
adrenal gland
59
placenta
47
thymus
42
artery
38
gonad
36
spinal cord
35
esophagus
33
spleen
29
skin of body
25
nerve
22
bone element
21
ovary
20
thyroid gland
18
lymphoid tissue
18
skeleton
17
testis
13
breast
13
prostate gland
11
mouth
11
uterus
10
tongue
10
urinary bladder
10
vagina
5
penis
4
bodily fluid
4
nose
3
blood
3
mammary gland
3
pituitary gland
1
lymphatic vessel
1
vein
Project
3043
AMP
5
ITG
Genome assembly (visualization)
2771
hg19
799
GRCh38
3
hg18
annotation_type!
binding sites
BIOSAMPLE
TYPE
3048 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
gene expression
histone modifications
eQTL
Fine-mapped variants
variant allelic effects
differential activity
variant to gene
pQTL
caQTL
sQTL
other
representative DNase hypersensitivity sites
tissue
heart
37
20
21
5
3
1
2
stomach
40
21
19
3
1
1
1
kidney
29
14
16
10
7
2
1
1
brain
29
16
18
2
1
3
2
1
lung
33
17
16
1
1
muscle of arm
33
16
16
1
1
small intestine
29
17
15
1
1
adrenal gland
28
17
14
1
1
1
placenta
26
15
14
1
2
1
muscle of leg
27
14
15
2
large intestine
27
14
13
1
1
muscle of back
28
13
13
left lung
26
13
13
liver
13
10
9
4
1
2
7
1
1
thymus
20
14
11
1
1
right lung
22
11
11
1
islet of Langerhans
1
3
6
11
1
13
2
1
2
2
right kidney
20
10
10
1
1
renal cortex interstitium
20
9
9
1
1
renal pelvis
19
9
9
2
1
retina
6
3
3
23
1
1
1
1
left kidney
18
9
9
heart left ventricle
11
7
8
3
1
1
1
2
spleen
15
8
6
2
1
1
adipose tissue
7
8
6
2
3
4
1
spinal cord
14
8
7
1
1
tibial nerve
6
3
4
3
2
2
3
2
body of pancreas
8
5
4
2
1
3
1
sigmoid colon
10
7
5
1
caudate nucleus
5
3
4
2
1
1
2
3
1
coronary artery
3
3
3
3
1
2
3
2
1
ovary
8
6
4
1
1
1
pancreas
5
5
3
5
1
1
1
subcutaneous adipose tissue
2
1
2
5
6
3
1
1
pigmented layer of retina
20
psoas muscle
7
8
4
1
heart right ventricle
6
5
5
1
1
1
right atrium auricular region
3
2
2
3
2
2
3
2
thyroid gland
8
5
4
1
1
tibial artery
3
2
3
3
1
2
3
2
transverse colon
8
5
4
1
1
gastrocnemius medialis
8
5
4
1
omental fat pad
5
2
2
2
2
2
3
substantia nigra
5
2
3
1
1
3
3
muscle of trunk
8
5
4
testis
7
3
3
1
1
1
1
ascending aorta
4
2
3
1
1
1
3
1
cerebellum
3
2
2
1
2
1
2
3
chorionic villus
8
4
4
frontal cortex
2
2
2
2
2
2
3
1
skeletal muscle tissue
6
3
3
1
1
2
endocrine pancreas
7
4
4
layer of hippocampus
6
3
4
1
1
putamen
2
1
1
2
1
1
3
3
1
upper lobe of left lung
7
3
3
1
1
Peyer's patch
7
3
3
1
temporal lobe
5
2
5
1
1
aorta
4
4
4
1
Ammon's horn
2
2
1
2
1
1
3
left cardiac atrium
2
1
6
1
1
1
left renal cortex interstitium
6
2
2
1
1
left renal pelvis
6
2
2
1
1
prostate gland
4
2
2
1
2
1
right renal pelvis
6
2
2
1
1
breast epithelium
5
3
2
1
esophagus muscularis mucosa
5
2
2
1
1
esophagus squamous epithelium
6
2
2
1
right renal cortex interstitium
5
2
2
1
1
thoracic aorta
4
2
3
1
1
angular gyrus
4
2
4
chorion membrane
3
3
3
1
colonic mucosa
4
2
3
1
esophagus
4
3
2
1
lower leg skin
6
2
2
trophoblast
4
3
2
1
vagina
4
2
2
1
1
cingulate gyrus
4
2
3
duodenal mucosa
4
2
3
eye
4
2
2
1
mucosa of rectum
4
2
3
parathyroid adenoma
5
2
2
right lobe of liver
2
1
1
1
1
3
stomach smooth muscle
4
2
3
tongue
4
2
2
1
uterus
3
2
1
1
1
1
globus pallidus
2
1
1
2
1
1
limb
3
2
2
1
muscle layer of colon
4
2
2
muscle layer of duodenum
4
2
2
occipital lobe
1
1
1
2
1
1
1
right cardiac atrium
2
2
3
1
urinary bladder
3
2
2
1
amygdala
1
1
2
3
gastroesophageal sphincter
5
1
1
hypothalamus
1
1
2
3
midbrain
1
1
1
2
1
1
nucleus accumbens
1
1
2
3
superior temporal gyrus
1
1
1
2
1
1
Brodmann (1909) area 46
2
2
2
anterior cingulate cortex
1
2
3
cerebellum (Hemisphere)
1
1
3
1
medulla oblongata
1
1
1
2
1
middle frontal gyrus
2
1
1
1
1
pons
1
1
1
2
1
skin of body
1
1
1
3
subcutaneous abdominal adipose tissue
5
1
umbilical cord
2
1
1
1
1
C1 segment of cervical spinal cord
1
1
3
cartilage tissue
1
2
2
cerebellar cortex
2
1
1
1
gastrocnemius medialis(Muscle - Skeletal)
1
1
3
germinal matrix
2
1
2
left ventricle myocardium
1
1
3
amnion
2
1
1
bone tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
3
embryonic facial prominence
1
1
1
1
femur
2
1
1
inferior parietal cortex
1
1
1
1
mucosa of stomach
2
1
1
rectum smooth muscle tissue
1
1
2
visceral abdominal adipose tissue
2
1
1
arm bone
1
1
1
cortex of kidney
1
1
1
dorsolateral prefrontal cortex
1
1
1
germinal center
1
1
1
leg bone
1
1
1
suprapubic skin
3
hindlimb muscle
1
1
muscle of leg
2
blood
2
chorion
2
forelimb muscle
1
1
middle frontal area 46
2
minor salivary gland
1
1
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
1
1
placental basal plate
2
prefrontal cortex
1
1
skeletal muscle
1
1
tissue
2
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
breast carcinoma
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium cancer
1
endothelial cell
1
entorhinal cortex
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
fallopian tube
1
fetal heart
1
first pancreatic bud
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney epithelium
1
left leg bone
1
locus ceruleus
1
mammary gland
1
medial dorsal nucleus of thalamus
1
metanephros
1
mid-frontal lobe
1
mitral valve
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
parietal lobe
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
prostate
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulmonary valve
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal cortex tubule
1
renal glomerulus
1
respiratory system smooth muscle
1
right arm bone
1
septal nuclear complex
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
skin of forearm
1
skin of prepuce of penis
1
small intestine - terminal Ileum
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
synovial joint
1
temporal pole
1
thalamic complex
1
thyroid
1
tissue-resident macrophage
1
tricuspid valve
1
type B pancreatic cell
1
white adipose tissue
1
white matter
1
whole blood
1
in vitro differentiated cells
neural progenitor cell
5
5
4
10
7
15
hematopoietic multipotent progenitor cell
19
10
10
1
1
1
adipocyte
4
6
6
4
1
1
embryonic stem cell
1
5
6
1
cardiomyocytes
11
mesenchymal stem cell
3
3
2
1
1
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
9
cardiomyocytes (cardiac muscle cell)
3
4
1
endodermal cell
4
2
2
cardiac muscle cell
4
1
1
1
mesendoderm
2
2
1
1
1
mesodermal cell
4
1
1
1
bipolar neuron
2
2
1
1
cardiac precursors (cardiac muscle cell)
1
4
1
dendritic cell
6
muscle cell
2
2
2
neuroblastoma cell line
6
neuronal stem cell
2
1
1
2
retinal pigment epithelial cell
6
SGBS preadipocytes
5
T-cell acute lymphoblastic leukemia
5
chondrocyte
5
neural cell
3
1
1
smooth muscle cell
2
1
1
1
trophoblast cell
2
2
1
B cell
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
2
ectodermal cell
2
1
1
hepatocyte
2
1
1
islet precursor cell
2
1
1
neuron
2
1
1
olfactory neurosphere cell line
1
1
1
1
rhabdomyosarcoma cell
4
adipose-derived stem cell
2
1
cardiac mesoderm primordium
1
1
1
hepatocyte(AFP)
3
pancreatic ductal adenocarcinoma
3
pancreatic ductal cell
3
CD4-positive helper T cell
1
1
cardiac myoblast
2
cardiovascular progenitor cell
2
colon adenocarcinoma
2
differentiating adipose-derived stem cell
2
endometriosis
2
esophageal adenocarcinoma
2
excitatory neuron
1
1
foreskin keratinocyte
1
1
foreskin melanocyte
1
1
hippocampal neuron
1
1
iPS DF 4.7 Cell Line
1
1
lower motor neuron
1
1
lymphocyte of B lineage (iPSC)
2
mammary gland epithelial cell
1
1
medulloblastoma cell line
2
myocyte
1
1
myotube
1
1
natural killer cell
1
1
neuroepithelial stem cell
2
Adipose SGBS cell line (adipocyte)
1
BICR 31
1
Barrett's epithelial cell line
1
CD8-Positive T-Lymphocytes
1
CD8-positive, alpha-beta T cell
1
Chondroid Chordoma
1
EAhy 926 cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
T-lymphoma cell line
1
Th1 cell
1
Uveal Melanoma
1
atypical teratoid rhabdoid tumor
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cardiac precursors
1
chondroblastoma
1
chronic lymphocytic leukemia
1
chronic myelomonocytic leukemia
1
colon carcinoma
1
colonic adenoma cell
1
colorectal adenocarcinoma
1
colorectal cancer
1
colorectal carcinoma
1
dermis microvascular lymphatic vessel endothelial cell
1
diffuse intrinsic pontine glioma
1
diffuse large B-cell lymphoma
1
ecto neural progenitor cell
1
embryonic fibroblast
1
endometrial stromal cell
1
endometrial stromal tumor
1
endometrioid carcinoma
1
endothelial cell
1
ependymoma
1
epidermal stem cell
1
erythroid cell
1
erythroid progenitor cell
1
fibroblast
1
fibroblast-like synoviocyte
1
hESC cell
1
head and neck squamous cell carcinoma BICR 16
1
head and neck squamous cell carcinoma BICR 6
1
hepatocellular carcinoma
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
lymphoid progenitor cell
1
melanoma cell line
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
mid-neurogenesis radial glial cells
1
neuron cell of Hypothalamus (neuron)
1
osteosarcoma
1
radial glial cell
1
renal cell carcinoma
1
secretory cell
1
skeletal muscle myoblast
1
skin fibroblast
1
stem cell
1
white adipose cell
1
See all biosamples
Download