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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
candidate regulatory elements
583
target gene predictions
555
chromatin state
266
accessible chromatin
184
gene expression
183
histone modifications
115
eQTL
74
Fine-mapped variants
binding sites
54
variant allelic effects
5
differential activity
4
variant to gene
3
pQTL
2
caQTL
2
sQTL
1
other
1
representative DNase hypersensitivity sites
Date released
989
September, 2022
235
February, 2021
113
March, 2020
84
June, 2020
77
August, 2021
70
May, 2021
67
May, 2020
65
January, 2020
59
January, 2022
57
February, 2024
48
February, 2020
35
November, 2022
28
March, 2024
26
February, 2023
23
August, 2017
12
November, 2019
9
May, 2019
8
April, 2019
7
October, 2019
6
March, 2023
4
September, 2023
3
September, 2018
2
January, 2018
2
May, 2022
1
August, 2020
1
August, 2022
Available data
1107
bed bed3+
526
bed bed9
287
tsv
132
bigWig
36
bigBed bed9
24
csv
1
bam
Organism
2030
Homo sapiens
Biosample type
2043
primary cell
1679
tissue
1382
cell line
353
in vitro differentiated cells
4
stem cell
Organ
267
brain
171
musculature of body
169
kidney
150
heart
143
limb
128
intestine
115
connective tissue
94
pancreas
92
lung
74
large intestine
69
epithelium
67
vasculature
66
blood vessel
65
adipose tissue
65
eye
57
extraembryonic component
57
stomach
47
liver
43
small intestine
37
embryo
36
artery
34
adrenal gland
33
placenta
33
ureter
27
thymus
23
gonad
22
spinal cord
20
esophagus
19
nerve
19
skin of body
18
bone element
18
spleen
14
skeleton
13
ovary
12
thyroid gland
10
lymphoid tissue
10
testis
9
prostate gland
8
breast
8
uterus
7
mouth
7
urinary bladder
6
tongue
6
vagina
5
penis
4
bodily fluid
3
blood
3
mammary gland
3
nose
3
pituitary gland
1
lymphatic vessel
1
vein
Project
2027
AMP
5
ITG
Genome assembly (visualization)
1755
hg19
799
GRCh38
3
hg18
annotation_type!
binding sites
candidate regulatory elements
BIOSAMPLE
TYPE
2032 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
chromatin state
accessible chromatin
gene expression
histone modifications
eQTL
Fine-mapped variants
variant allelic effects
differential activity
variant to gene
pQTL
caQTL
sQTL
other
representative DNase hypersensitivity sites
tissue
heart
20
21
5
3
1
2
kidney
14
16
10
7
2
1
1
stomach
21
19
3
1
1
1
brain
16
18
2
1
3
2
1
islet of Langerhans
1
3
6
11
1
13
2
1
2
2
liver
10
9
4
1
2
7
1
1
lung
17
16
1
1
adrenal gland
17
14
1
1
1
muscle of arm
16
16
1
1
small intestine
17
15
1
1
placenta
15
14
1
2
1
retina
3
3
23
1
1
1
1
muscle of leg
14
15
2
large intestine
14
13
1
1
thymus
14
11
1
1
left lung
13
13
muscle of back
13
13
adipose tissue
8
6
2
3
4
1
heart left ventricle
7
8
3
1
1
1
2
right lung
11
11
1
right kidney
10
10
1
1
renal pelvis
9
9
2
1
pigmented layer of retina
20
renal cortex interstitium
9
9
1
1
subcutaneous adipose tissue
1
2
5
6
3
1
1
tibial nerve
3
4
3
2
2
3
2
coronary artery
3
3
3
1
2
3
2
1
left kidney
9
9
spleen
8
6
2
1
1
caudate nucleus
3
4
2
1
1
2
3
1
spinal cord
8
7
1
1
body of pancreas
5
4
2
1
3
1
pancreas
5
3
5
1
1
1
right atrium auricular region
2
2
3
2
2
3
2
tibial artery
2
3
3
1
2
3
2
frontal cortex
2
2
2
2
2
3
1
cerebellum
2
2
1
2
1
2
3
heart right ventricle
5
5
1
1
1
omental fat pad
2
2
2
2
2
3
ovary
6
4
1
1
1
psoas muscle
8
4
1
putamen
1
1
2
1
1
3
3
1
sigmoid colon
7
5
1
substantia nigra
2
3
1
1
3
3
ascending aorta
2
3
1
1
1
3
1
thyroid gland
5
4
1
1
transverse colon
5
4
1
1
Ammon's horn
2
1
2
1
1
3
gastrocnemius medialis
5
4
1
left cardiac atrium
1
6
1
1
1
skeletal muscle tissue
3
3
1
1
2
testis
3
3
1
1
1
1
aorta
4
4
1
layer of hippocampus
3
4
1
1
muscle of trunk
5
4
temporal lobe
2
5
1
1
chorionic villus
4
4
endocrine pancreas
4
4
prostate gland
2
2
1
2
1
upper lobe of left lung
3
3
1
1
Peyer's patch
3
3
1
amygdala
1
1
2
3
chorion membrane
3
3
1
hypothalamus
1
1
2
3
nucleus accumbens
1
1
2
3
occipital lobe
1
1
2
1
1
1
right lobe of liver
1
1
1
1
3
thoracic aorta
2
3
1
1
angular gyrus
2
4
anterior cingulate cortex
1
2
3
breast epithelium
3
2
1
cerebellum (Hemisphere)
1
1
3
1
colonic mucosa
2
3
1
esophagus
3
2
1
esophagus muscularis mucosa
2
2
1
1
globus pallidus
1
1
2
1
1
left renal cortex interstitium
2
2
1
1
left renal pelvis
2
2
1
1
midbrain
1
1
2
1
1
right cardiac atrium
2
3
1
right renal cortex interstitium
2
2
1
1
right renal pelvis
2
2
1
1
superior temporal gyrus
1
1
2
1
1
trophoblast
3
2
1
uterus
2
1
1
1
1
vagina
2
2
1
1
C1 segment of cervical spinal cord
1
1
3
cartilage tissue
1
2
2
cingulate gyrus
2
3
duodenal mucosa
2
3
esophagus squamous epithelium
2
2
1
eye
2
2
1
gastrocnemius medialis(Muscle - Skeletal)
1
1
3
left ventricle myocardium
1
1
3
limb
2
2
1
medulla oblongata
1
1
2
1
mucosa of rectum
2
3
pons
1
1
2
1
skin of body
1
1
3
stomach smooth muscle
2
3
tongue
2
2
1
urinary bladder
2
2
1
Brodmann (1909) area 46
2
2
bone tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
3
lower leg skin
2
2
middle frontal gyrus
1
1
1
1
muscle layer of colon
2
2
muscle layer of duodenum
2
2
parathyroid adenoma
2
2
umbilical cord
1
1
1
1
visceral abdominal adipose tissue
2
1
1
cerebellar cortex
1
1
1
cortex of kidney
1
1
1
dorsolateral prefrontal cortex
1
1
1
embryonic facial prominence
1
1
1
germinal matrix
1
2
inferior parietal cortex
1
1
1
rectum smooth muscle tissue
1
2
hindlimb muscle
1
1
muscle of leg
2
amnion
1
1
arm bone
1
1
blood
2
femur
1
1
gastroesophageal sphincter
1
1
germinal center
1
1
leg bone
1
1
minor salivary gland
1
1
mucosa of stomach
1
1
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
1
1
prefrontal cortex
1
1
skeletal muscle
1
1
tissue
2
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
breast carcinoma
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium cancer
1
endothelial cell
1
entorhinal cortex
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
fallopian tube
1
fetal heart
1
first pancreatic bud
1
forelimb muscle
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney epithelium
1
locus ceruleus
1
mammary gland
1
medial dorsal nucleus of thalamus
1
metanephros
1
mid-frontal lobe
1
mitral valve
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
parietal lobe
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
prostate
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulmonary valve
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
renal cortex tubule
1
renal glomerulus
1
respiratory system smooth muscle
1
septal nuclear complex
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
skin of forearm
1
skin of prepuce of penis
1
small intestine - terminal Ileum
1
smooth muscle tissue
1
subcutaneous abdominal adipose tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
synovial joint
1
temporal pole
1
thalamic complex
1
thyroid
1
tissue-resident macrophage
1
tricuspid valve
1
type B pancreatic cell
1
white adipose tissue
1
white matter
1
whole blood
1
in vitro differentiated cells
neural progenitor cell
5
4
10
7
15
hematopoietic multipotent progenitor cell
10
10
1
1
1
adipocyte
6
6
4
1
1
embryonic stem cell
1
5
6
1
cardiomyocytes
11
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
9
cardiomyocytes (cardiac muscle cell)
3
4
1
mesenchymal stem cell
3
2
1
1
cardiac precursors (cardiac muscle cell)
1
4
1
dendritic cell
6
neuroblastoma cell line
6
retinal pigment epithelial cell
6
SGBS preadipocytes
5
T-cell acute lymphoblastic leukemia
5
chondrocyte
5
mesendoderm
2
1
1
1
B cell
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
2
bipolar neuron
2
1
1
endodermal cell
2
2
muscle cell
2
2
neuronal stem cell
1
1
2
rhabdomyosarcoma cell
4
adipose-derived stem cell
2
1
cardiac muscle cell
1
1
1
hepatocyte(AFP)
3
mesodermal cell
1
1
1
olfactory neurosphere cell line
1
1
1
pancreatic ductal adenocarcinoma
3
pancreatic ductal cell
3
smooth muscle cell
1
1
1
trophoblast cell
2
1
CD4-positive helper T cell
1
1
cardiac mesoderm primordium
1
1
colon adenocarcinoma
2
differentiating adipose-derived stem cell
2
ectodermal cell
1
1
endometriosis
2
esophageal adenocarcinoma
2
excitatory neuron
1
1
foreskin keratinocyte
1
1
foreskin melanocyte
1
1
hepatocyte
1
1
hippocampal neuron
1
1
iPS DF 4.7 Cell Line
1
1
islet precursor cell
1
1
lower motor neuron
1
1
lymphocyte of B lineage (iPSC)
2
mammary gland epithelial cell
1
1
medulloblastoma cell line
2
natural killer cell
1
1
neural cell
1
1
neuron
1
1
Adipose SGBS cell line (adipocyte)
1
BICR 31
1
Barrett's epithelial cell line
1
CD8-Positive T-Lymphocytes
1
CD8-positive, alpha-beta T cell
1
Chondroid Chordoma
1
EAhy 926 cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
T-lymphoma cell line
1
Th1 cell
1
Uveal Melanoma
1
atypical teratoid rhabdoid tumor
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cardiac precursors
1
chondroblastoma
1
chronic lymphocytic leukemia
1
chronic myelomonocytic leukemia
1
colon carcinoma
1
colonic adenoma cell
1
colorectal adenocarcinoma
1
colorectal cancer
1
colorectal carcinoma
1
dermis microvascular lymphatic vessel endothelial cell
1
diffuse intrinsic pontine glioma
1
diffuse large B-cell lymphoma
1
embryonic fibroblast
1
endometrial stromal cell
1
endometrial stromal tumor
1
endometrioid carcinoma
1
endothelial cell
1
ependymoma
1
epidermal stem cell
1
erythroid cell
1
erythroid progenitor cell
1
fibroblast
1
fibroblast-like synoviocyte
1
hESC cell
1
head and neck squamous cell carcinoma BICR 16
1
head and neck squamous cell carcinoma BICR 6
1
hepatocellular carcinoma
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
lymphoid progenitor cell
1
melanoma cell line
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
myocyte
1
myotube
1
neuron cell of Hypothalamus (neuron)
1
osteosarcoma
1
renal cell carcinoma
1
secretory cell
1
skeletal muscle myoblast
1
skin fibroblast
1
stem cell
1
white adipose cell
1
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