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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1016
candidate regulatory elements
583
target gene predictions
266
accessible chromatin
184
gene expression
183
histone modifications
115
eQTL
74
Fine-mapped variants
74
binding sites
54
variant allelic effects
29
chromatin state
5
differential activity
4
variant to gene
3
pQTL
2
caQTL
2
sQTL
1
other
1
representative DNase hypersensitivity sites
Date released
988
September, 2022
830
February, 2021
114
March, 2020
84
June, 2020
77
August, 2021
65
May, 2021
64
May, 2020
61
January, 2020
59
January, 2022
58
February, 2024
48
February, 2020
35
November, 2022
28
March, 2024
26
February, 2023
23
August, 2017
11
November, 2019
6
March, 2023
4
October, 2019
4
September, 2023
3
September, 2018
2
January, 2018
2
May, 2022
1
April, 2019
1
August, 2020
1
August, 2022
Available data
2197
bed bed3+
bed bed9
287
tsv
132
bigWig
36
bigBed bed9
24
csv
1
bam
Organism
2594
Homo sapiens
Biosample type
2307
primary cell
2173
cell line
2166
tissue
430
in vitro differentiated cells
4
stem cell
Organ
302
brain
243
musculature of body
241
kidney
187
limb
181
intestine
172
heart
138
lung
133
connective tissue
107
pancreas
105
large intestine
85
stomach
82
epithelium
79
extraembryonic component
77
adipose tissue
71
eye
70
vasculature
68
blood vessel
61
small intestine
56
liver
52
embryo
51
ureter
48
adrenal gland
46
placenta
37
thymus
36
artery
32
gonad
31
skin of body
29
esophagus
29
spinal cord
28
spleen
21
nerve
19
bone element
17
ovary
16
thyroid gland
15
skeleton
15
testis
14
lymphoid tissue
13
prostate gland
12
uterus
11
breast
9
mouth
8
penis
8
tongue
8
urinary bladder
8
vagina
5
mammary gland
4
bodily fluid
3
blood
3
nose
3
pituitary gland
2
lymphatic vessel
1
vein
Project
2591
AMP
5
ITG
Genome assembly (visualization)
2319
hg19
278
GRCh38
3
hg18
files.file_type!
bed bed9
BIOSAMPLE
TYPE
2596 results
search-icon
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Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
gene expression
histone modifications
eQTL
Fine-mapped variants
binding sites
variant allelic effects
chromatin state
differential activity
variant to gene
pQTL
caQTL
sQTL
other
representative DNase hypersensitivity sites
tissue
heart
37
20
5
3
1
1
2
stomach
40
21
3
1
1
1
kidney
29
14
10
7
2
1
1
1
brain
29
16
2
1
3
2
1
1
lung
33
17
1
1
muscle of arm
33
16
1
1
adrenal gland
28
17
1
1
1
small intestine
29
17
1
1
placenta
26
15
1
2
1
1
islet of Langerhans
1
6
11
1
13
2
2
1
3
2
2
large intestine
27
14
1
1
muscle of leg
27
14
2
liver
13
10
4
1
2
7
1
2
1
1
muscle of back
28
13
left lung
26
13
retina
6
3
23
1
1
1
1
1
thymus
20
14
1
1
1
right lung
22
11
1
right kidney
20
10
1
1
renal cortex interstitium
20
9
1
1
renal pelvis
19
9
2
1
spleen
15
8
2
1
1
1
left kidney
18
9
adipose tissue
7
8
2
3
4
1
1
heart left ventricle
11
7
3
1
1
1
2
spinal cord
14
8
1
1
subcutaneous adipose tissue
2
2
5
6
3
1
1
1
tibial nerve
6
3
3
2
2
3
2
body of pancreas
8
5
2
1
3
1
pancreas
5
5
5
1
1
1
1
1
pigmented layer of retina
20
caudate nucleus
5
3
2
1
1
2
3
1
1
coronary artery
3
3
3
1
2
3
2
1
sigmoid colon
10
7
1
ovary
8
6
1
1
1
right atrium auricular region
3
2
3
2
2
3
2
omental fat pad
5
2
2
2
2
3
psoas muscle
7
8
1
substantia nigra
5
2
1
1
3
3
1
tibial artery
3
2
3
1
2
3
2
testis
7
3
1
1
1
1
1
thyroid gland
8
5
1
1
transverse colon
8
5
1
1
cerebellum
3
2
1
2
1
2
3
frontal cortex
2
2
2
2
2
3
1
gastrocnemius medialis
8
5
1
heart right ventricle
6
5
1
1
1
putamen
2
1
2
1
1
3
3
1
ascending aorta
4
2
1
1
1
3
1
layer of hippocampus
6
3
1
1
1
1
muscle of trunk
8
5
skeletal muscle tissue
6
3
1
1
2
upper lobe of left lung
7
3
1
1
1
chorionic villus
8
4
prostate gland
4
2
1
2
1
2
Ammon's horn
2
2
2
1
1
3
Peyer's patch
7
3
1
endocrine pancreas
7
4
left cardiac atrium
2
1
1
1
1
5
left renal cortex interstitium
6
2
1
1
left renal pelvis
6
2
1
1
right renal pelvis
6
2
1
1
temporal lobe
5
2
1
1
1
aorta
4
4
1
breast epithelium
5
3
1
esophagus muscularis mucosa
5
2
1
1
esophagus squamous epithelium
6
2
1
right renal cortex interstitium
5
2
1
1
trophoblast
4
3
1
1
colonic mucosa
4
2
1
1
esophagus
4
3
1
lower leg skin
6
2
right lobe of liver
2
1
1
1
3
thoracic aorta
4
2
1
1
uterus
3
2
1
1
1
vagina
4
2
1
1
amygdala
1
1
2
3
chorion membrane
3
3
1
cingulate gyrus
4
2
1
duodenal mucosa
4
2
1
eye
4
2
1
globus pallidus
2
1
2
1
1
hypothalamus
1
1
2
3
midbrain
1
1
2
1
1
1
mucosa of rectum
4
2
1
nucleus accumbens
1
1
2
3
occipital lobe
1
1
2
1
1
1
parathyroid adenoma
5
2
stomach smooth muscle
4
2
1
tongue
4
2
1
angular gyrus
4
2
anterior cingulate cortex
1
2
3
cerebellum (Hemisphere)
1
1
3
1
gastroesophageal sphincter
5
1
limb
3
2
1
muscle layer of colon
4
2
muscle layer of duodenum
4
2
subcutaneous abdominal adipose tissue
5
1
superior temporal gyrus
1
1
2
1
1
urinary bladder
3
2
1
C1 segment of cervical spinal cord
1
1
3
cartilage tissue
1
2
2
gastrocnemius medialis(Muscle - Skeletal)
1
1
3
left ventricle myocardium
1
1
3
medulla oblongata
1
1
2
1
middle frontal gyrus
2
1
1
1
pons
1
1
2
1
right cardiac atrium
2
2
1
skin of body
1
1
3
umbilical cord
2
1
1
1
Brodmann (1909) area 46
2
2
bone tissue
4
cerebellar cortex
2
1
1
cortex of kidney
1
1
1
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
3
visceral abdominal adipose tissue
2
1
1
amnion
2
1
dorsolateral prefrontal cortex
1
1
1
embryonic facial prominence
1
1
1
femur
2
1
germinal matrix
2
1
inferior parietal cortex
1
1
1
mucosa of stomach
2
1
prefrontal cortex
1
1
1
rectum smooth muscle tissue
1
1
1
suprapubic skin
3
hindlimb muscle
1
1
muscle of leg
2
arm bone
1
1
blood
2
breast carcinoma
1
1
chorion
2
endometrium cancer
1
1
fallopian tube
1
1
first pancreatic bud
1
1
forelimb muscle
1
1
germinal center
1
1
kidney epithelium
1
1
leg bone
1
1
mammary gland
1
1
middle frontal area 46
2
minor salivary gland
1
1
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
1
1
placental basal plate
2
respiratory system smooth muscle
1
1
skeletal muscle
1
1
skin of forearm
1
1
skin of prepuce of penis
1
1
tissue
2
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
fetal heart
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
mitral valve
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
parietal lobe
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
prostate
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulmonary valve
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
right arm bone
1
septal nuclear complex
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
synovial joint
1
temporal pole
1
thalamic complex
1
thyroid
1
tissue-resident macrophage
1
tricuspid valve
1
type B pancreatic cell
1
white adipose tissue
1
white matter
1
whole blood
1
in vitro differentiated cells
neural progenitor cell
5
5
10
7
15
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
4
1
1
1
4
cardiomyocytes
11
embryonic stem cell
1
6
1
1
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
mesenchymal stem cell
3
3
1
1
1
progenitor cell of endocrine pancreas
9
T-cell acute lymphoblastic leukemia
5
3
cardiomyocytes (cardiac muscle cell)
3
4
1
neuroblastoma cell line
6
2
neuronal stem cell
2
1
1
2
2
mesendoderm
2
2
1
1
1
cardiac muscle cell
4
1
1
cardiac precursors (cardiac muscle cell)
1
4
1
dendritic cell
6
endodermal cell
4
2
mesodermal cell
4
1
1
retinal pigment epithelial cell
6
SGBS preadipocytes
5
bipolar neuron
2
2
1
chondrocyte
5
B cell
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
2
adipose-derived stem cell
2
1
1
colon adenocarcinoma
2
2
muscle cell
2
2
neural cell
3
1
rhabdomyosarcoma cell
4
smooth muscle cell
2
1
1
trophoblast cell
2
2
ectodermal cell
2
1
esophageal adenocarcinoma
2
1
foreskin keratinocyte
1
1
1
foreskin melanocyte
1
1
1
hepatocyte
2
1
hepatocyte(AFP)
3
iPS DF 4.7 Cell Line
1
1
1
islet precursor cell
2
1
mammary gland epithelial cell
1
1
1
neuron
2
1
olfactory neurosphere cell line
1
1
1
pancreatic ductal adenocarcinoma
3
pancreatic ductal cell
3
BICR 31
1
1
CD4-positive helper T cell
1
1
CD8-Positive T-Lymphocytes
1
1
EAhy 926 cell
1
1
T-lymphoma cell line
1
1
Th1 cell
1
1
atypical teratoid rhabdoid tumor
1
1
cardiac mesoderm primordium
1
1
cardiac myoblast
2
cardiovascular progenitor cell
2
chronic myelomonocytic leukemia
1
1
colorectal adenocarcinoma
1
1
dermis microvascular lymphatic vessel endothelial cell
1
1
differentiating adipose-derived stem cell
2
diffuse intrinsic pontine glioma
1
1
diffuse large B-cell lymphoma
1
1
endometrial stromal cell
1
1
endometrial stromal tumor
1
1
endometriosis
2
epidermal stem cell
1
1
erythroid progenitor cell
1
1
excitatory neuron
1
1
fibroblast
1
1
hippocampal neuron
1
1
lower motor neuron
1
1
lymphocyte of B lineage (iPSC)
2
medulloblastoma cell line
2
myocyte
1
1
myotube
1
1
natural killer cell
1
1
neuroepithelial stem cell
2
osteosarcoma
1
1
Adipose SGBS cell line (adipocyte)
1
Barrett's epithelial cell line
1
CD8-positive, alpha-beta T cell
1
Chondroid Chordoma
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
Uveal Melanoma
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cardiac precursors
1
chondroblastoma
1
chronic lymphocytic leukemia
1
colon carcinoma
1
colonic adenoma cell
1
colorectal cancer
1
colorectal carcinoma
1
ecto neural progenitor cell
1
embryonic fibroblast
1
endometrioid carcinoma
1
endothelial cell
1
ependymoma
1
erythroid cell
1
fibroblast-like synoviocyte
1
hESC cell
1
head and neck squamous cell carcinoma BICR 16
1
head and neck squamous cell carcinoma BICR 6
1
hematopoietic stem cell
1
hepatocellular carcinoma
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
lymphoid progenitor cell
1
melanoma cell line
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
mid-neurogenesis radial glial cells
1
neuron cell of Hypothalamus (neuron)
1
radial glial cell
1
renal cell carcinoma
1
secretory cell
1
skeletal muscle myoblast
1
skin fibroblast
1
stem cell
1
white adipose cell
1
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