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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1016
candidate regulatory elements
583
target gene predictions
553
chromatin state
184
gene expression
183
histone modifications
136
accessible chromatin
115
eQTL
74
Fine-mapped variants
74
binding sites
54
variant allelic effects
5
differential activity
4
variant to gene
3
pQTL
2
caQTL
2
sQTL
1
other
1
representative DNase hypersensitivity sites
Date released
1481
September, 2022
822
February, 2021
114
March, 2020
84
June, 2020
70
August, 2021
70
May, 2021
60
May, 2020
56
January, 2022
48
February, 2020
45
February, 2024
28
March, 2024
24
November, 2022
23
August, 2017
22
January, 2020
8
April, 2019
7
February, 2023
7
May, 2019
6
March, 2023
4
September, 2023
3
October, 2019
2
January, 2018
2
May, 2022
1
August, 2020
1
August, 2022
1
November, 2019
Available data
2197
bed bed3+
526
bed bed9
287
tsv
bigWig
36
bigBed bed9
24
csv
1
bam
Organism
2988
Homo sapiens
Biosample type
2532
tissue
2348
cell line
2059
primary cell
458
in vitro differentiated cells
4
stem cell
Organ
340
brain
304
musculature of body
285
kidney
232
intestine
222
limb
200
heart
181
lung
136
connective tissue
134
large intestine
108
stomach
103
extraembryonic component
101
pancreas
80
adipose tissue
80
small intestine
78
vasculature
76
blood vessel
65
embryo
64
epithelium
63
liver
62
adrenal gland
61
ureter
60
placenta
48
thymus
45
eye
39
gonad
36
artery
36
spinal cord
35
esophagus
34
skin of body
33
spleen
23
nerve
21
ovary
20
thyroid gland
18
lymphoid tissue
18
testis
15
prostate gland
14
bone element
13
breast
13
uterus
11
mouth
10
skeleton
10
tongue
10
urinary bladder
10
vagina
8
penis
5
mammary gland
4
bodily fluid
4
nose
3
blood
3
pituitary gland
2
lymphatic vessel
1
vein
Project
2985
AMP
5
ITG
Genome assembly (visualization)
2713
hg19
701
GRCh38
3
hg18
files.file_type!
bigWig
BIOSAMPLE
TYPE
2990 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
gene expression
histone modifications
accessible chromatin
eQTL
Fine-mapped variants
binding sites
variant allelic effects
differential activity
variant to gene
pQTL
caQTL
sQTL
other
representative DNase hypersensitivity sites
tissue
heart
37
20
21
3
1
2
1
2
stomach
40
21
19
1
1
3
1
brain
29
16
18
1
3
1
2
1
1
kidney
29
14
15
7
2
1
1
1
1
lung
33
17
16
1
1
muscle of arm
33
16
16
1
small intestine
29
17
15
1
1
adrenal gland
28
17
14
1
1
1
placenta
26
15
14
2
1
1
1
muscle of leg
27
14
15
1
large intestine
27
14
13
1
1
muscle of back
28
13
13
left lung
26
13
13
thymus
20
14
11
1
1
1
liver
13
10
9
1
2
2
7
1
1
1
right lung
22
11
11
1
right kidney
20
10
10
1
islet of Langerhans
1
3
11
1
2
13
2
2
1
2
2
renal cortex interstitium
20
9
9
1
renal pelvis
19
9
9
1
1
left kidney
18
9
9
spleen
15
8
6
1
1
1
1
adipose tissue
7
8
6
3
1
4
1
1
heart left ventricle
11
7
8
1
1
1
2
spinal cord
14
8
7
1
1
body of pancreas
8
5
4
2
1
3
1
retina
6
3
3
1
1
7
1
1
1
sigmoid colon
10
7
5
1
tibial nerve
6
3
4
2
1
2
3
2
caudate nucleus
5
3
4
1
1
1
2
3
1
ovary
8
6
4
1
1
1
psoas muscle
7
8
4
1
pancreas
5
5
3
1
2
1
1
1
subcutaneous adipose tissue
2
1
5
6
3
1
1
thyroid gland
8
5
4
1
1
transverse colon
8
5
4
1
1
gastrocnemius medialis
8
5
4
1
heart right ventricle
6
5
5
1
1
substantia nigra
5
2
3
1
1
3
3
testis
7
3
3
1
1
1
1
1
coronary artery
3
3
2
1
2
3
2
1
muscle of trunk
8
5
4
right atrium auricular region
3
2
2
2
1
2
3
2
tibial artery
3
2
3
1
1
2
3
2
chorionic villus
8
4
4
layer of hippocampus
6
3
4
1
1
1
omental fat pad
5
2
2
2
2
3
skeletal muscle tissue
6
3
3
1
1
2
upper lobe of left lung
7
3
3
1
1
1
ascending aorta
4
2
3
1
1
3
1
cerebellum
3
2
2
2
1
2
3
endocrine pancreas
7
4
4
frontal cortex
2
2
2
2
1
2
3
1
Peyer's patch
7
3
3
1
prostate gland
4
2
2
2
1
1
2
putamen
2
1
1
1
1
1
3
3
1
temporal lobe
5
2
5
1
1
aorta
4
4
4
1
Ammon's horn
2
2
1
1
1
1
3
breast epithelium
5
3
2
1
esophagus muscularis mucosa
5
2
2
1
1
esophagus squamous epithelium
6
2
2
1
left cardiac atrium
2
1
6
1
1
left renal cortex interstitium
6
2
2
1
left renal pelvis
6
2
2
1
right renal pelvis
6
2
2
1
trophoblast
4
3
2
1
1
angular gyrus
4
2
4
chorion membrane
3
3
3
1
colonic mucosa
4
2
3
1
esophagus
4
3
2
1
lower leg skin
6
2
2
right renal cortex interstitium
5
2
2
1
thoracic aorta
4
2
3
1
vagina
4
2
2
1
1
cingulate gyrus
4
2
3
duodenal mucosa
4
2
3
eye
4
2
2
1
mucosa of rectum
4
2
3
parathyroid adenoma
5
2
2
right lobe of liver
2
1
1
1
1
3
stomach smooth muscle
4
2
3
tongue
4
2
2
1
uterus
3
2
1
1
1
1
limb
3
2
2
1
muscle layer of colon
4
2
2
muscle layer of duodenum
4
2
2
right cardiac atrium
2
2
3
1
urinary bladder
3
2
2
1
amygdala
1
1
2
3
gastroesophageal sphincter
5
1
1
globus pallidus
2
1
1
1
1
1
hypothalamus
1
1
2
3
midbrain
1
1
1
1
1
1
1
nucleus accumbens
1
1
2
3
occipital lobe
1
1
1
1
1
1
1
pigmented layer of retina
7
Brodmann (1909) area 46
2
2
2
anterior cingulate cortex
1
2
3
cerebellum (Hemisphere)
1
1
3
1
skin of body
1
1
1
3
subcutaneous abdominal adipose tissue
5
1
superior temporal gyrus
1
1
1
1
1
1
umbilical cord
2
1
1
1
1
C1 segment of cervical spinal cord
1
1
3
cartilage tissue
1
2
2
gastrocnemius medialis(Muscle - Skeletal)
1
1
3
germinal matrix
2
1
2
left ventricle myocardium
1
1
3
medulla oblongata
1
1
1
1
1
middle frontal gyrus
2
1
1
1
pons
1
1
1
1
1
amnion
2
1
1
bone tissue
4
cerebellar cortex
2
1
1
cortex of kidney
1
1
1
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
3
embryonic facial prominence
1
1
1
1
femur
2
1
1
inferior parietal cortex
1
1
1
1
mucosa of stomach
2
1
1
rectum smooth muscle tissue
1
1
2
visceral abdominal adipose tissue
2
1
1
arm bone
1
1
1
dorsolateral prefrontal cortex
1
1
1
germinal center
1
1
1
leg bone
1
1
1
prefrontal cortex
1
1
1
suprapubic skin
3
muscle of leg
2
blood
2
breast carcinoma
1
1
chorion
2
endometrium cancer
1
1
fallopian tube
1
1
first pancreatic bud
1
1
kidney epithelium
1
1
mammary gland
1
1
middle frontal area 46
2
minor salivary gland
1
1
pituitary gland
1
1
placental basal plate
2
respiratory system smooth muscle
1
1
skeletal muscle
1
1
skin of forearm
1
1
skin of prepuce of penis
1
1
tissue
2
hindlimb muscle
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
forelimb muscle
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
mitral valve
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
parietal lobe
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
prostate
1
pulmonary valve
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
right arm bone
1
septal nuclear complex
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
synovial joint
1
temporal pole
1
thalamic complex
1
thyroid
1
tricuspid valve
1
white adipose tissue
1
white matter
1
whole blood
1
in vitro differentiated cells
neural progenitor cell
5
5
4
7
15
10
hematopoietic multipotent progenitor cell
19
10
10
1
1
1
1
adipocyte
4
6
6
1
1
3
1
embryonic stem cell
1
5
1
6
1
cardiomyocytes
11
mesenchymal stem cell
3
3
2
1
1
1
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
9
T-cell acute lymphoblastic leukemia
5
3
cardiomyocytes (cardiac muscle cell)
3
4
1
endodermal cell
4
2
2
mesendoderm
2
2
1
1
1
1
neuroblastoma cell line
6
2
neuronal stem cell
2
1
2
1
2
mesodermal cell
4
1
1
1
bipolar neuron
2
2
1
1
cardiac muscle cell
4
1
1
cardiac precursors (cardiac muscle cell)
1
4
1
dendritic cell
6
muscle cell
2
2
2
chondrocyte
5
neural cell
3
1
1
smooth muscle cell
2
1
1
1
trophoblast cell
2
2
1
B cell
2
2
adipose-derived stem cell
1
2
1
colon adenocarcinoma
2
2
ectodermal cell
2
1
1
hepatocyte
2
1
1
islet precursor cell
2
1
1
neuron
2
1
1
olfactory neurosphere cell line
1
1
1
1
retinal pigment epithelial cell
4
rhabdomyosarcoma cell
4
SGBS preadipocytes
3
cardiac mesoderm primordium
1
1
1
esophageal adenocarcinoma
2
1
foreskin keratinocyte
1
1
1
foreskin melanocyte
1
1
1
hepatocyte(AFP)
3
iPS DF 4.7 Cell Line
1
1
1
mammary gland epithelial cell
1
1
1
pancreatic ductal adenocarcinoma
3
pancreatic ductal cell
3
BICR 31
1
1
CD4-positive helper T cell
1
1
CD8-Positive T-Lymphocytes
1
1
EAhy 926 cell
1
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T-lymphoma cell line
1
1
Th1 cell
1
1
atypical teratoid rhabdoid tumor
1
1
cardiac myoblast
2
cardiovascular progenitor cell
2
chronic myelomonocytic leukemia
1
1
colorectal adenocarcinoma
1
1
dermis microvascular lymphatic vessel endothelial cell
1
1
differentiating adipose-derived stem cell
2
diffuse intrinsic pontine glioma
1
1
diffuse large B-cell lymphoma
1
1
endometrial stromal cell
1
1
endometrial stromal tumor
1
1
endometriosis
2
epidermal stem cell
1
1
erythroid progenitor cell
1
1
fibroblast
1
1
lymphocyte of B lineage (iPSC)
2
medulloblastoma cell line
2
myocyte
1
1
myotube
1
1
natural killer cell
1
1
neuroepithelial stem cell
2
osteosarcoma
1
1
Adipose SGBS cell line (adipocyte)
1
Barrett's epithelial cell line
1
CD8-positive, alpha-beta T cell
1
Chondroid Chordoma
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
Uveal Melanoma
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
chondroblastoma
1
chronic lymphocytic leukemia
1
colon carcinoma
1
colonic adenoma cell
1
colorectal cancer
1
colorectal carcinoma
1
ecto neural progenitor cell
1
embryonic fibroblast
1
endometrioid carcinoma
1
endothelial cell
1
ependymoma
1
erythroid cell
1
excitatory neuron
1
fibroblast-like synoviocyte
1
hESC cell
1
head and neck squamous cell carcinoma BICR 16
1
head and neck squamous cell carcinoma BICR 6
1
hematopoietic stem cell
1
hepatocellular carcinoma
1
hippocampal neuron
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
lower motor neuron
1
lymphoid progenitor cell
1
melanoma cell line
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
mid-neurogenesis radial glial cells
1
neuron cell of Hypothalamus (neuron)
1
radial glial cell
1
renal cell carcinoma
1
secretory cell
1
skeletal muscle myoblast
1
skin fibroblast
1
stem cell
1
white adipose cell
1
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