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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
995
candidate regulatory elements
569
target gene predictions
542
chromatin state
261
accessible chromatin
181
histone modifications
178
gene expression
107
eQTL
73
binding sites
71
Fine-mapped variants
54
variant allelic effects
4
differential activity
4
variant to gene
3
pQTL
2
sQTL
1
caQTL
1
other
1
representative DNase hypersensitivity sites
Date released
1449
September, 2022
817
February, 2021
109
March, 2020
82
June, 2020
71
August, 2021
69
May, 2021
67
May, 2020
64
January, 2020
58
January, 2022
54
February, 2024
46
February, 2020
35
November, 2022
27
March, 2024
26
February, 2023
21
August, 2017
11
November, 2019
9
May, 2019
8
April, 2019
7
October, 2019
6
March, 2023
4
September, 2023
2
January, 2018
2
September, 2018
1
August, 2020
1
August, 2022
Available data
2152
bed bed3+
515
bed bed9
276
tsv
130
bigWig
35
bigBed bed9
21
csv
Organism
3045
Homo sapiens
Biosample type
2584
tissue
2408
primary cell
2324
cell line
463
in vitro differentiated cells
4
stem cell
Organ
353
brain
308
musculature of body
302
kidney
236
limb
232
intestine
215
heart
181
lung
145
connective tissue
134
large intestine
117
pancreas
108
stomach
103
extraembryonic component
87
epithelium
86
vasculature
85
adipose tissue
84
blood vessel
80
small intestine
76
eye
65
embryo
liver
64
ureter
62
adrenal gland
60
placenta
48
thymus
42
artery
39
gonad
36
spinal cord
35
esophagus
34
skin of body
34
spleen
25
nerve
22
bone element
21
ovary
20
thyroid gland
18
lymphoid tissue
18
skeleton
18
testis
15
prostate gland
13
breast
13
uterus
11
mouth
tongue
10
urinary bladder
10
vagina
8
penis
5
mammary gland
4
bodily fluid
4
nose
3
blood
3
pituitary gland
2
lymphatic vessel
1
vein
Project
3042
AMP
5
ITG
Genome assembly (visualization)
2779
hg19
781
GRCh38
2
hg18
organ_slims!
tongue
liver
BIOSAMPLE
TYPE
3047 results
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table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
histone modifications
gene expression
eQTL
binding sites
Fine-mapped variants
variant allelic effects
differential activity
variant to gene
pQTL
sQTL
caQTL
other
representative DNase hypersensitivity sites
tissue
heart
37
20
21
5
1
3
1
2
stomach
40
21
19
3
1
1
1
kidney
29
14
16
10
2
7
1
1
1
brain
29
16
18
2
3
1
2
1
1
lung
33
17
16
1
1
muscle of arm
33
16
16
1
1
small intestine
29
17
15
1
1
adrenal gland
28
17
14
1
1
1
placenta
26
15
14
1
2
1
1
muscle of leg
27
14
15
2
large intestine
27
14
13
1
1
muscle of back
28
13
13
left lung
26
13
13
thymus
20
14
11
1
1
1
right lung
22
11
11
1
islet of Langerhans
1
3
6
1
11
13
2
2
1
2
2
right kidney
20
10
10
1
1
renal cortex interstitium
20
9
9
1
1
renal pelvis
19
9
9
2
1
retina
6
3
3
23
1
1
1
1
1
left kidney
18
9
9
heart left ventricle
11
7
8
3
1
1
1
2
spleen
15
8
6
2
1
1
1
adipose tissue
7
8
6
2
3
4
1
1
spinal cord
14
8
7
1
1
tibial nerve
6
3
4
3
2
2
3
2
body of pancreas
8
5
4
2
1
3
1
sigmoid colon
10
7
5
1
caudate nucleus
5
3
4
2
1
1
2
3
1
pancreas
5
5
3
5
1
1
1
1
coronary artery
3
3
3
3
1
2
3
2
1
ovary
8
6
4
1
1
1
subcutaneous adipose tissue
2
1
2
5
6
3
1
1
pigmented layer of retina
20
psoas muscle
7
8
4
1
heart right ventricle
6
5
5
1
1
1
right atrium auricular region
3
2
2
3
2
2
3
2
thyroid gland
8
5
4
1
1
tibial artery
3
2
3
3
1
2
3
2
transverse colon
8
5
4
1
1
gastrocnemius medialis
8
5
4
1
omental fat pad
5
2
2
2
2
2
3
substantia nigra
5
2
3
1
1
3
3
testis
7
3
3
1
1
1
1
1
muscle of trunk
8
5
4
ascending aorta
4
2
3
1
1
1
3
1
cerebellum
3
2
2
1
1
2
2
3
chorionic villus
8
4
4
frontal cortex
2
2
2
2
2
2
3
1
layer of hippocampus
6
3
4
1
1
1
skeletal muscle tissue
6
3
3
1
1
2
upper lobe of left lung
7
3
3
1
1
1
endocrine pancreas
7
4
4
putamen
2
1
1
2
1
1
3
3
1
Peyer's patch
7
3
3
1
prostate gland
4
2
2
1
2
1
2
temporal lobe
5
2
5
1
1
aorta
4
4
4
1
Ammon's horn
2
2
1
2
1
1
3
left cardiac atrium
2
1
6
1
1
1
left renal cortex interstitium
6
2
2
1
1
left renal pelvis
6
2
2
1
1
right renal pelvis
6
2
2
1
1
breast epithelium
5
3
2
1
esophagus muscularis mucosa
5
2
2
1
1
esophagus squamous epithelium
6
2
2
1
right renal cortex interstitium
5
2
2
1
1
thoracic aorta
4
2
3
1
1
trophoblast
4
3
2
1
1
angular gyrus
4
2
4
chorion membrane
3
3
3
1
colonic mucosa
4
2
3
1
esophagus
4
3
2
1
lower leg skin
6
2
2
vagina
4
2
2
1
1
cingulate gyrus
4
2
3
duodenal mucosa
4
2
3
eye
4
2
2
1
mucosa of rectum
4
2
3
parathyroid adenoma
5
2
2
stomach smooth muscle
4
2
3
uterus
3
2
1
1
1
1
globus pallidus
2
1
1
2
1
1
limb
3
2
2
1
midbrain
1
1
1
2
1
1
1
muscle layer of colon
4
2
2
muscle layer of duodenum
4
2
2
occipital lobe
1
1
1
2
1
1
1
right cardiac atrium
2
2
3
1
urinary bladder
3
2
2
1
amygdala
1
1
2
3
gastroesophageal sphincter
5
1
1
hypothalamus
1
1
2
3
nucleus accumbens
1
1
2
3
superior temporal gyrus
1
1
1
2
1
1
Brodmann (1909) area 46
2
2
2
anterior cingulate cortex
1
2
3
cerebellum (Hemisphere)
1
1
3
1
medulla oblongata
1
1
1
2
1
middle frontal gyrus
2
1
1
1
1
pons
1
1
1
2
1
skin of body
1
1
1
3
subcutaneous abdominal adipose tissue
5
1
umbilical cord
2
1
1
1
1
C1 segment of cervical spinal cord
1
1
3
cartilage tissue
1
2
2
cerebellar cortex
2
1
1
1
gastrocnemius medialis(Muscle - Skeletal)
1
1
3
germinal matrix
2
1
2
left ventricle myocardium
1
1
3
amnion
2
1
1
bone tissue
4
cortex of kidney
1
1
1
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
3
embryonic facial prominence
1
1
1
1
femur
2
1
1
inferior parietal cortex
1
1
1
1
mucosa of stomach
2
1
1
rectum smooth muscle tissue
1
1
2
visceral abdominal adipose tissue
2
1
1
arm bone
1
1
1
dorsolateral prefrontal cortex
1
1
1
germinal center
1
1
1
leg bone
1
1
1
prefrontal cortex
1
1
1
suprapubic skin
3
hindlimb muscle
1
1
muscle of leg
2
blood
2
breast carcinoma
1
1
chorion
2
endometrium cancer
1
1
fallopian tube
1
1
first pancreatic bud
1
1
forelimb muscle
1
1
kidney epithelium
1
1
mammary gland
1
1
middle frontal area 46
2
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
1
1
placental basal plate
2
respiratory system smooth muscle
1
1
skeletal muscle
1
1
skin of forearm
1
1
skin of prepuce of penis
1
1
tissue
2
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
fetal heart
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
minor salivary gland
1
mitral valve
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
parietal lobe
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
prostate
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulmonary valve
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
right arm bone
1
septal nuclear complex
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
synovial joint
1
temporal pole
1
thalamic complex
1
thyroid
1
tissue-resident macrophage
1
tricuspid valve
1
type B pancreatic cell
1
white adipose tissue
1
white matter
1
whole blood
1
in vitro differentiated cells
neural progenitor cell
5
5
4
10
15
7
hematopoietic multipotent progenitor cell
19
10
10
1
1
1
1
adipocyte
4
6
6
4
1
1
1
embryonic stem cell
1
5
6
1
1
cardiomyocytes
11
mesenchymal stem cell
3
3
2
1
1
1
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
9
T-cell acute lymphoblastic leukemia
5
3
cardiomyocytes (cardiac muscle cell)
3
4
1
endodermal cell
4
2
2
mesendoderm
2
2
1
1
1
1
neuroblastoma cell line
6
2
neuronal stem cell
2
1
1
2
2
cardiac muscle cell
4
1
1
1
mesodermal cell
4
1
1
1
bipolar neuron
2
2
1
1
cardiac precursors (cardiac muscle cell)
1
4
1
dendritic cell
6
muscle cell
2
2
2
retinal pigment epithelial cell
6
SGBS preadipocytes
5
chondrocyte
5
neural cell
3
1
1
smooth muscle cell
2
1
1
1
trophoblast cell
2
2
1
B cell
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
2
adipose-derived stem cell
2
1
1
colon adenocarcinoma
2
2
ectodermal cell
2
1
1
islet precursor cell
2
1
1
neuron
2
1
1
olfactory neurosphere cell line
1
1
1
1
rhabdomyosarcoma cell
4
cardiac mesoderm primordium
1
1
1
esophageal adenocarcinoma
2
1
foreskin keratinocyte
1
1
1
foreskin melanocyte
1
1
1
iPS DF 4.7 Cell Line
1
1
1
mammary gland epithelial cell
1
1
1
pancreatic ductal adenocarcinoma
3
pancreatic ductal cell
3
BICR 31
1
1
CD4-positive helper T cell
1
1
CD8-Positive T-Lymphocytes
1
1
EAhy 926 cell
1
1
T-lymphoma cell line
1
1
Th1 cell
1
1
atypical teratoid rhabdoid tumor
1
1
cardiac myoblast
2
cardiovascular progenitor cell
2
chronic myelomonocytic leukemia
1
1
colorectal adenocarcinoma
1
1
dermis microvascular lymphatic vessel endothelial cell
1
1
differentiating adipose-derived stem cell
2
diffuse intrinsic pontine glioma
1
1
diffuse large B-cell lymphoma
1
1
endometrial stromal cell
1
1
endometrial stromal tumor
1
1
endometriosis
2
epidermal stem cell
1
1
erythroid progenitor cell
1
1
excitatory neuron
1
1
fibroblast
1
1
hippocampal neuron
1
1
lower motor neuron
1
1
lymphocyte of B lineage (iPSC)
2
medulloblastoma cell line
2
myocyte
1
1
myotube
1
1
natural killer cell
1
1
neuroepithelial stem cell
2
osteosarcoma
1
1
Adipose SGBS cell line (adipocyte)
1
Barrett's epithelial cell line
1
CD8-positive, alpha-beta T cell
1
Chondroid Chordoma
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
Uveal Melanoma
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cardiac precursors
1
chondroblastoma
1
chronic lymphocytic leukemia
1
colon carcinoma
1
colonic adenoma cell
1
colorectal cancer
1
colorectal carcinoma
1
ecto neural progenitor cell
1
embryonic fibroblast
1
endometrioid carcinoma
1
endothelial cell
1
ependymoma
1
erythroid cell
1
fibroblast-like synoviocyte
1
hESC cell
1
head and neck squamous cell carcinoma BICR 16
1
head and neck squamous cell carcinoma BICR 6
1
hematopoietic stem cell
1
hepatocellular carcinoma
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
lymphoid progenitor cell
1
melanoma cell line
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
mid-neurogenesis radial glial cells
1
neuron cell of Hypothalamus (neuron)
1
radial glial cell
1
renal cell carcinoma
1
secretory cell
1
skeletal muscle myoblast
1
skin fibroblast
1
stem cell
1
white adipose cell
1
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