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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
484
accessible chromatin
478
gene expression
372
target gene predictions
328
candidate regulatory elements
histone modifications
197
chromatin state
152
differential activity
100
binding sites
81
variant allelic effects
44
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
486
September, 2022
364
February, 2021
333
November, 2021
281
September, 2023
152
February, 2024
142
May, 2021
86
May, 2020
56
January, 2021
55
March, 2023
53
June, 2020
40
May, 2022
39
August, 2021
37
January, 2022
31
October, 2022
23
January, 2020
19
April, 2020
16
February, 2020
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
5
March, 2020
4
February, 2023
3
November, 2020
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1385
bed bed3+
589
tsv
410
bigWig
164
bed bed9
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2214
Homo sapiens
Biosample type
2563
tissue
2259
primary cell
1768
cell line
376
in vitro differentiated cells
4
stem cell
Organ
802
epithelium
309
kidney
269
connective tissue
166
vasculature
123
pancreas
111
blood vessel
96
skin of body
58
liver
47
musculature of body
45
mammary gland
39
penis
38
extraembryonic component
35
brain
34
lung
30
heart
26
artery
22
eye
22
intestine
21
embryo
20
vein
17
lymphatic vessel
15
bronchus
11
adrenal gland
11
bone element
11
bone marrow
11
stomach
10
esophagus
10
prostate gland
9
placenta
7
blood
7
bodily fluid
6
large intestine
4
gonad
4
mouth
4
small intestine
4
spinal cord
4
uterus
3
thyroid gland
3
trachea
2
ovary
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
1567
AMP
333
ENCODE
281
KPMP
59
T1D
19
LungMap
Genome assembly (visualization)
1593
hg19
619
GRCh38
annotation_type!
histone modifications
BIOSAMPLE
TYPE
2259 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
candidate regulatory elements
chromatin state
differential activity
binding sites
variant allelic effects
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
common myeloid progenitor, CD34-positive
14
27
13
monocyte
18
15
2
1
4
2
1
1
B cell
6
2
10
14
8
endothelial cell
15
9
7
2
2
1
2
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
fibroblast
16
4
1
6
2
hepatocyte
8
13
3
1
1
1
2
macrophage
12
2
3
3
7
1
regulatory T cell
5
7
4
5
3
1
2
T-helper 1 cell
3
7
3
6
3
1
epithelial cell of proximal tubule
1
16
1
2
1
1
1
CD8-positive, alpha-beta memory T cell
7
8
7
T cell
6
4
4
4
2
2
pericyte cell
10
10
1
1
T-helper 17 cell
2
7
3
5
3
1
glomerular endothelial cell
2
14
1
2
1
1
CD8-positive, alpha-beta T cell
4
3
5
7
1
endothelial cell of umbilical vein
2
4
6
5
2
1
mononuclear cell
6
7
6
1
natural killer cell
3
2
5
6
3
1
smooth muscle cell
9
1
6
2
1
1
foreskin keratinocyte
4
11
4
pancreatic beta cell
8
3
3
3
1
T-helper 2 cell
2
3
3
5
3
1
pancreatic alpha cell
7
3
3
3
1
pancreatic ductal cell
6
3
3
3
1
1
trophoblast cell
1
5
7
4
astrocyte
8
1
4
2
1
endothelial cell of hepatic sinusoid
6
4
6
fibroblast of lung
4
6
4
2
pancreatic acinar cell
6
3
3
3
1
pancreatic delta cell
5
3
4
3
1
CD4-positive, alpha-beta T cell
1
3
8
3
keratinocyte
2
5
3
3
1
1
neutrophil
3
4
2
2
2
1
1
osteoblast
5
2
2
2
1
3
skeletal muscle myoblast
2
1
2
4
3
2
1
foreskin fibroblast
1
2
6
1
4
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
2
4
2
1
1
1
1
mammary gland epithelial cell
1
4
3
3
1
1
neurosphere
3
7
3
skeletal muscle satellite cell
5
2
2
2
2
excitatory neuron
12
fibroblast of cardiac tissue
2
4
3
3
fibroblast of dermis
4
4
3
1
bronchial epithelial cell
1
2
4
2
2
erythroblast
5
2
2
2
glomerular visceral epithelial cell
2
5
1
2
1
dermis blood vessel endothelial cell
2
6
2
kidney tubule cell
2
1
2
3
2
mammary epithelial cell
1
1
3
1
4
epithelial cell of prostate
3
4
2
memory B cell
4
3
2
naive T cell
3
3
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
3
2
1
retinal pigment epithelial cell
3
1
2
1
2
skeletal muscle fiber
5
2
2
skin fibroblast
2
3
2
2
fibroblast of breast
2
4
2
glutamatergic neuron
6
2
hepatic stellate cell
3
1
1
1
1
1
kidney glomerular epithelial cell
2
1
1
2
1
1
mature neutrophil
7
1
myoepithelial cell of mammary gland
2
4
2
pancreatic stellate cell
2
2
1
3
renal cortical epithelial cell
2
1
1
2
1
1
cardiac muscle cell
1
1
2
1
2
choroid plexus epithelial cell
1
1
2
1
1
1
fibroblast of mammary gland
1
1
2
1
2
fibroblast of pulmonary artery
1
1
2
1
2
fibroblast of villous mesenchyme
1
1
2
1
2
kidney epithelial cell
1
1
1
2
1
1
kidney interstitial cell
1
6
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
2
3
1
1
mesangial cell
2
5
mesenchymal stem cell
2
1
1
1
1
1
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
type II pneumocyte
4
2
1
CD1c-positive myeloid dendritic cell
1
1
2
1
1
T-cell
2
4
alternatively activated macrophage
1
1
4
astrocyte of the cerebellum
1
1
2
1
1
astrocyte of the hippocampus
1
1
2
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
epithelial cell of esophagus
1
2
1
2
foreskin melanocyte
1
4
1
gamma-delta T cell
2
4
naive B cell
3
1
2
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
2
2
1
1
pulmonary artery endothelial cell
1
1
2
1
1
skeletal muscle cell
1
1
2
1
1
smooth muscle cell of the brain vasculature
1
1
2
1
1
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
1
2
2
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
T follicular helper cell
2
2
1
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
basal cell
2
1
2
brain microvascular endothelial cell
1
1
2
1
central memory CD8-positive, alpha-beta T cell
2
3
effector memory CD8-positive, alpha-beta T cell
2
3
fibroblast of peridontal ligament
1
1
2
1
fibroblast of the aortic adventitia
1
2
1
1
gabaergic neuron
3
2
inflammatory macrophage
1
1
3
inhibitory neuron
5
iris pigment epithelial cell
1
1
2
1
kidney capillary endothelial cell
1
1
1
1
1
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
1
4
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
1
3
1
mast cell
1
1
1
1
1
myofibroblast cell
1
1
3
non-pigmented ciliary epithelial cell
1
1
2
1
pancreatic endothelial cell
1
1
3
peripheral blood mononuclear cell
4
1
plasma cell
2
1
1
1
activated CD4-positive, alpha-beta T cell
1
2
1
adipocyte
2
1
1
adult endothelial progenitor cell
3
1
astrocyte of the spinal cord
1
2
1
blood vessel smooth muscle cell
2
2
cardiac fibroblast
3
1
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of gingiva
1
2
1
fibroblast of the conjunctiva
1
2
1
kidney connecting tubule epithelial cell
4
leukocyte
2
2
mature natural killer cell
2
2
megakaryocyte
2
2
memory T cell
2
2
memory regulatory T cell
2
2
mesothelial cell
2
1
1
nephron progenitor
4
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
smooth muscle cell of the esophagus
2
2
stromal cell of bone marrow
1
2
1
type I pneumocyte
3
1
vascular associated smooth muscle cell
2
2
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Schwann cell
1
2
activated CD8-positive, alpha-beta T cell
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
aortic adventitial fibroblast
1
2
aortic endothelial cell
2
1
blood cell
3
brain pericyte
1
1
1
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
glial cell
2
1
goblet cell
1
2
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mammary stem cell
1
1
1
microglial cell
1
1
1
naive B cel
2
1
naive regulatory T cell
2
1
naive t cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic quiescent stellate cell
3
parietal cell
1
1
1
peptic cell
1
1
1
plasmacytoid dendritic cell
2
1
regular cardiac myocyte
1
1
1
renal epithelial cell
1
2
schwann cell
2
1
smooth muscle cell of the coronary artery
1
1
1
thyroid follicular cell
1
1
1
tracheal epithelial cell
1
2
type B pancreatic cell
3
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Ishikawa
1
1
Kupffer cell
2
Muller cell
2
Th1 cell
1
1
Th17 cell
1
1
Th2 cell
1
1
acute myeloid leukemia cell
2
alveolar macrophage
1
1
basal cell of epidermis
1
1
bone marrow cell
2
capillary endothelial cell
2
cardiac endothelial cell
1
1
cholangiocyte
1
1
colon goblet cell
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector memory CD4-positive, alpha-beta T cell
1
1
endothelial cell of coronary artery
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
erythroid cell
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
intestinal tuft cell
1
1
kidney inner medulla collecting duct intercalated cell
2
luteal cell
1
1
mature NK T cell
1
1
melanocyte
1
1
meso-epithelial cell
1
1
mononuclear cell of bone marrow
2
myeloid dendritic cell
1
1
myoepithelial cell
1
1
myotube
2
natural killer cell mediated cytotoxicity
1
1
neoplastic cell
1
1
neural cell
1
1
neuron
2
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
paneth cell
1
1
peripheral blood stem cell
1
1
peripheral blood-derived erythroblast
2
preadipocyte
1
1
primordial germ cell
1
1
pulmonary interstitial fibroblast
1
1
regular atrial cardiac myocyte
1
1
renal principal cell
1
1
renal vesicle
2
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small intestine goblet cell
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
ureteric bud
1
1
uterine smooth muscle cell
1
1
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Adipose stromal cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-lymphocyte
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Rhabdoid Tumor of the Kidney
1
Satellite Cells, Skeletal Muscle
1
activated pancreatic stellate cell
1
alpha-beta T cell
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac muscle myoblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
chromaffin cell of adrenal gland
1
chronic lymphocytic leukemia cell
1
ciliated epithelial cell
1
colorectal cancer
1
columnar chondrocyte
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
erythrocyte
1
erythroid lineage cell
1
erythroid progenitor cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulosa cell
1
head and neck squamous cell carcinoma
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
islet of Langerhans
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
leukemic stem cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
neuroendocrine cell
1
neuronal stem cell
1
non-neuronal cell
1
pancreatic cell
1
pancreatic endocrine cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
pre-B acute lymphoblastic leukemia cell
1
progenitor cell
1
prostate gland cancer cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
renal proximal tubule cell
1
retinal bipolar neuron
1
sensory neuron
1
small cell ovarian carcinoma cell
1
somatic gonadal cell
1
somatic muscle myotube
1
sympathetic neuron
1
trophoblast giant cell
1
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