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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
484
accessible chromatin
478
gene expression
target gene predictions
328
candidate regulatory elements
210
histone modifications
chromatin state
152
differential activity
100
binding sites
81
variant allelic effects
44
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
454
February, 2021
281
September, 2023
222
November, 2021
210
May, 2021
166
September, 2022
146
February, 2024
70
May, 2020
55
March, 2023
53
June, 2020
42
August, 2021
36
January, 2022
31
October, 2022
28
January, 2021
21
January, 2020
19
April, 2020
16
February, 2020
13
May, 2022
9
August, 2018
9
November, 2022
5
October, 2019
4
February, 2023
4
March, 2020
3
November, 2020
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1217
bed bed3+
589
tsv
407
bigWig
108
txt
13
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
1855
Homo sapiens
Biosample type
1900
primary cell
1762
cell line
1623
tissue
361
in vitro differentiated cells
Organ
658
epithelium
291
kidney
204
connective tissue
134
vasculature
102
pancreas
90
blood vessel
57
liver
56
skin of body
42
musculature of body
28
penis
27
brain
27
mammary gland
24
artery
23
extraembryonic component
21
lung
20
heart
17
eye
15
intestine
13
embryo
12
lymphatic vessel
11
bronchus
11
vein
9
blood
9
bodily fluid
9
bone element
8
bone marrow
8
placenta
7
adrenal gland
7
stomach
6
esophagus
5
prostate gland
5
trachea
4
uterus
3
gonad
3
large intestine
2
mouth
2
small intestine
2
spinal cord
2
thyroid gland
1
adipose tissue
1
ovary
1
pericardium
1
testis
1
thymus
Project
1347
AMP
281
KPMP
222
ENCODE
31
T1D
19
LungMap
Genome assembly (visualization)
1234
hg19
426
GRCh38
annotation_type!
chromatin state
target gene predictions
BIOSAMPLE
TYPE
1900 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
candidate regulatory elements
histone modifications
differential activity
binding sites
variant allelic effects
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
15
86
1
4
2
1
1
CD8-positive, alpha-beta T cell
4
3
7
30
endothelial cell
15
9
1
2
2
1
2
hepatocyte
8
13
1
4
1
2
common myeloid progenitor, CD34-positive
27
fibroblast
16
1
6
2
macrophage
12
2
3
7
1
B cell
6
2
14
epithelial cell of proximal tubule
1
16
2
1
1
regulatory T cell
5
7
5
1
1
2
glomerular endothelial cell
2
14
2
1
T-helper 1 cell
3
7
6
1
endothelial cell of hepatic sinusoid
6
4
6
pancreatic ductal cell
6
3
2
3
1
1
T-helper 17 cell
2
7
5
1
pancreatic beta cell
8
3
3
1
CD4-positive, alpha-beta memory T cell
14
T cell
6
4
2
2
osteoblast
5
2
2
2
3
pancreatic alpha cell
7
3
3
1
smooth muscle cell
9
1
2
1
1
foreskin fibroblast
1
6
2
4
natural killer cell
3
2
6
1
1
pancreatic acinar cell
6
3
3
1
astrocyte
8
1
2
1
excitatory neuron
12
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
4
2
1
1
1
1
pancreatic delta cell
5
3
3
1
T-helper 2 cell
2
3
5
1
endothelial cell of umbilical vein
2
6
2
1
foreskin keratinocyte
11
mammary epithelial cell
1
3
3
4
pericyte cell
10
1
skeletal muscle myoblast
2
1
4
1
2
1
neutrophil
4
2
2
1
1
CD4-positive, alpha-beta T cell
1
8
glomerular visceral epithelial cell
2
5
2
keratinocyte
2
3
2
1
1
skeletal muscle fiber
5
2
2
skeletal muscle satellite cell
5
2
2
trophoblast cell
1
7
1
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
bronchial epithelial cell
1
4
1
2
fibroblast of lung
6
2
mononuclear cell
7
1
retinal pigment epithelial cell
3
2
1
2
erythroblast
5
2
hepatic stellate cell
3
1
1
1
1
kidney interstitial cell
1
6
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
4
3
mesangial cell
2
5
naive thymus-derived CD8-positive, alpha-beta T cell
3
3
1
neurosphere
7
pancreatic stellate cell
2
2
3
cardiac muscle cell
1
2
1
2
dermis blood vessel endothelial cell
6
enterocyte
3
3
fibroblast of mammary gland
1
2
1
2
fibroblast of pulmonary artery
1
2
1
2
fibroblast of villous mesenchyme
1
2
1
2
gamma-delta T cell
2
4
glutamatergic neuron
6
kidney glomerular epithelial cell
2
1
2
1
kidney tubule cell
2
1
3
mammary gland epithelial cell
1
3
1
1
mesenchymal stem cell
2
1
1
1
1
peripheral blood mononuclear cell
4
1
1
renal cortical epithelial cell
2
1
2
1
type I muscle cell
3
1
1
1
type II muscle cell
3
1
1
1
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD1c-positive myeloid dendritic cell
1
2
1
1
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
T follicular helper cell
2
2
1
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
central memory CD8-positive, alpha-beta T cell
2
3
choroid plexus epithelial cell
1
2
1
1
effector memory CD8-positive, alpha-beta T cell
2
3
fibroblast of cardiac tissue
2
3
fibroblast of dermis
4
1
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
1
4
kidney epithelial cell
1
1
2
1
kidney loop of Henle thick ascending limb epithelial cell
5
mast cell
1
1
1
1
1
myofibroblast cell
1
1
3
pancreatic endothelial cell
1
1
3
pancreatic polypeptide-secreting cell
2
2
1
plasma cell
2
1
1
1
pulmonary artery endothelial cell
1
2
1
1
tracheal epithelial cell
1
2
2
type II pneumocyte
4
1
T-cell
4
acute myeloid leukemia cell
2
2
adipocyte
2
1
1
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the cerebellum
1
2
1
astrocyte of the hippocampus
1
2
1
basal cell
2
2
cardiac fibroblast
3
1
cortical cell of adrenal gland
3
1
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
epithelial cell of esophagus
2
2
epithelial cell of prostate
4
fibroblast of breast
4
foreskin melanocyte
4
kidney connecting tubule epithelial cell
4
leukocyte
2
2
mature natural killer cell
2
2
memory T cell
2
2
memory regulatory T cell
2
2
myoepithelial cell of mammary gland
4
naive B cell
3
1
nephron progenitor
4
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
preadipocyte
1
2
1
renal epithelial cell
1
1
2
skeletal muscle cell
1
2
1
skin fibroblast
2
2
smooth muscle cell of the brain vasculature
1
2
1
vascular associated smooth muscle cell
2
2
CD4-positive helper T cell
1
2
Cycling Mononuclear Phagocyte
3
Ishikawa
1
1
1
Mast Cell
3
S-shaped body
3
Schwann cell
1
2
Th1 cell
1
1
1
Th17 cell
1
1
1
adult endothelial progenitor cell
3
blood cell
3
bone marrow cell
2
1
brain microvascular endothelial cell
1
2
brain pericyte
1
1
1
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
erythroid cell
1
1
1
fibroblast of peridontal ligament
1
2
fibroblast of the aortic adventitia
2
1
gabaergic neuron
3
glial cell
2
1
goblet cell
1
2
iris pigment epithelial cell
1
2
kidney capillary endothelial cell
1
1
1
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
luminal epithelial cell of mammary gland
2
1
lung microvascular endothelial cell
3
meso-epithelial cell
1
1
1
mesothelial cell
2
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cel
2
1
naive T cell
3
naive regulatory T cell
2
1
neoplastic cell
1
1
1
non-pigmented ciliary epithelial cell
1
2
pancreatic quiescent stellate cell
3
peripheral blood stem cell
1
1
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
type I pneumocyte
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
activated CD4-positive, alpha-beta T cell
1
1
activated CD8-positive, alpha-beta T cell
1
1
astrocyte of the spinal cord
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cardiac muscle myoblast
1
1
cholangiocyte
1
1
chronic lymphocytic leukemia cell
1
1
ciliated cell
2
club cell
2
columnar chondrocyte
1
1
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
effector memory CD4-positive, alpha-beta T cell
1
1
endocardial cell
2
endothelial cell of coronary artery
1
1
enteric neuron
2
enteric smooth muscle cell
2
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of gingiva
2
fibroblast of the conjunctiva
2
head and neck squamous cell carcinoma
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
mantle cell lymphoma cell
2
mature neutrophil
1
1
megakaryocyte
2
microglial cell
1
1
myeloid dendritic cell
1
1
naive t cell
1
1
neural cell
1
1
neuron
2
neuronal stem cell
1
1
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic endocrine cell
1
1
parietal cell
1
1
peptic cell
1
1
peripheral blood-derived erythroblast
2
plasmacytoid dendritic cell
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
renal principal cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
schwann cell
2
small cell ovarian carcinoma cell
1
1
smooth muscle cell of the coronary artery
1
1
smooth muscle cell of the esophagus
2
somatic muscle myotube
1
1
stromal cell of bone marrow
2
thyroid follicular cell
1
1
ureteric bud
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alternatively activated macrophage
1
alveolar cell type II
1
alveolar macrophage
1
amnion mesenchymal stem cell
1
amniotic epithelial cell
1
amniotic stem cell
1
aortic smooth muscle cell
1
basal cell of epidermis
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac endothelial cell
1
cardiac ventricle fibroblast
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
colorectal cancer
1
conventional dendritic cell
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of distal tubule
1
erythrocyte
1
erythroid lineage cell
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
foveolar cell of stomach
1
gastric goblet cell
1
granular cell of epidermis
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
inflammatory macrophage
1
intestinal epithelial cell
1
intestinal tuft cell
1
islet of Langerhans
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary stem cell
1
mature B cell
1
mature NK T cell
1
melanocyte
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
myoepithelial cell
1
natural killer cell mediated cytotoxicity
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
non-neuronal cell
1
pancreatic cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
paneth cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
progenitor cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
regular atrial cardiac myocyte
1
regular cardiac myocyte
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
respiratory goblet cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
skeletal muscle fibroblast
1
small intestine goblet cell
1
somatic gonadal cell
1
sperm
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
sympathetic neuron
1
trophoblast giant cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
1
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