Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
484
accessible chromatin
478
gene expression
372
target gene predictions
328
candidate regulatory elements
210
histone modifications
197
chromatin state
152
differential activity
100
binding sites
81
variant allelic effects
44
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
222
November, 2021
165
September, 2022
53
June, 2020
47
May, 2020
40
May, 2022
31
February, 2024
28
January, 2021
23
January, 2020
19
April, 2020
13
August, 2021
13
May, 2021
9
November, 2022
7
October, 2019
6
August, 2017
2
November, 2020
1
February, 2021
1
January, 2022
1
June, 2021
Available data
487
bed bed3+
394
bigWig
164
bed bed9
27
bed bed9+
9
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
636
Homo sapiens
Biosample type
708
tissue
681
primary cell
354
cell line
113
in vitro differentiated cells
1
stem cell
Organ
206
epithelium
89
connective tissue
42
vasculature
37
pancreas
32
kidney
29
blood vessel
25
skin of body
20
musculature of body
19
liver
14
extraembryonic component
14
lung
13
brain
13
mammary gland
11
intestine
10
eye
9
heart
8
embryo
7
penis
7
vein
6
adrenal gland
6
artery
5
bronchus
5
lymphatic vessel
5
stomach
4
bone element
4
bone marrow
4
placenta
3
esophagus
3
large intestine
2
gonad
2
prostate gland
2
small intestine
2
uterus
1
blood
1
bodily fluid
1
mouth
1
ovary
1
spinal cord
1
thymus
1
thyroid gland
1
trachea
Project
411
AMP
222
ENCODE
29
T1D
19
LungMap
Genome assembly (visualization)
680
hg19
446
GRCh38
BIOSAMPLE
TYPE
681 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
chromatin state
primary cell
monocyte
18
fibroblast
16
endothelial cell
15
B cell
6
8
common myeloid progenitor, CD34-positive
13
excitatory neuron
12
macrophage
12
pericyte cell
10
1
T cell
6
4
CD4-positive, alpha-beta memory T cell
9
astrocyte
8
1
hepatocyte
8
1
smooth muscle cell
9
pancreatic beta cell
8
regulatory T cell
5
3
CD8-positive, alpha-beta memory T cell
7
endothelial cell of umbilical vein
2
5
erythroblast
5
2
mature neutrophil
7
pancreatic alpha cell
7
skeletal muscle satellite cell
5
2
T-helper 1 cell
3
3
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
mononuclear cell
6
natural killer cell
3
3
osteoblast
5
1
pancreatic acinar cell
6
pancreatic ductal cell
6
CD14-positive, CD16-negative classical monocyte
5
CD8-positive, alpha-beta T cell
4
1
T-helper 17 cell
2
3
T-helper 2 cell
2
3
fibroblast of cardiac tissue
2
3
inhibitory neuron
5
keratinocyte
2
3
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle myoblast
2
3
trophoblast cell
1
4
CD14-positive monocyte
4
CD4-positive, alpha-beta T cell
1
3
alternatively activated macrophage
4
fibroblast of lung
4
foreskin keratinocyte
4
hepatic stellate cell
3
1
kidney tubule cell
2
2
mammary gland epithelial cell
1
3
memory B cell
4
retinal pigment epithelial cell
3
1
skin fibroblast
2
2
type II pneumocyte
4
cardiac fibroblast
3
bronchial epithelial cell
1
2
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
fibroblast of dermis
3
gabaergic neuron
3
glomerular endothelial cell
2
1
glomerular visceral epithelial cell
2
1
inflammatory macrophage
3
kidney glomerular epithelial cell
2
1
luminal epithelial cell of mammary gland
2
1
mesenchymal stem cell
2
1
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
renal cortical epithelial cell
2
1
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
3
CD1c-positive myeloid dendritic cell
1
1
Muller cell
2
T follicular helper cell
2
acute myeloid leukemia cell
2
adipocyte
2
aortic endothelial cell
2
astrocyte of the cerebellum
1
1
astrocyte of the hippocampus
1
1
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain microvascular endothelial cell
1
1
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
1
1
ciliated cell
2
club cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
1
1
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of breast
2
fibroblast of mammary gland
1
1
fibroblast of peridontal ligament
1
1
fibroblast of pulmonary artery
1
1
fibroblast of villous mesenchyme
1
1
foreskin fibroblast
1
1
gamma-delta T cell
2
glial cell
2
iris pigment epithelial cell
1
1
kidney capillary endothelial cell
1
1
kidney epithelial cell
1
1
leukocyte
2
mammary epithelial cell
1
1
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesothelial cell
2
myoepithelial cell of mammary gland
2
naive regulatory T cell
2
neuron
2
neutrophil
2
non-pigmented ciliary epithelial cell
1
1
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasma cell
2
plasmacytoid dendritic cell
2
pulmonary artery endothelial cell
1
1
schwann cell
2
skeletal muscle cell
1
1
smooth muscle cell of the brain vasculature
1
1
smooth muscle cell of the esophagus
2
B-Lymphocytes
1
B-lymphocyte
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
Glioblastoma
1
Ishikawa
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
aortic adventitial fibroblast
1
astrocyte of the spinal cord
1
basal cell of epidermis
1
brain pericyte
1
cardiac endothelial cell
1
cardiac muscle cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
erythrocyte
1
erythroid cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of gingiva
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
foreskin melanocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
goblet cell
1
granular cell of epidermis
1
hepatoblast
1
immature natural killer cell
1
intestinal tuft cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lung microvascular endothelial cell
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary stem cell
1
mast cell
1
mature NK T cell
1
mature eosinophil
1
melanocyte
1
metanephros
1
microglial cell
1
microglial cell/astrocyte
1
myeloid dendritic cell
1
myoepithelial cell
1
myofibroblast cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neoplastic cell
1
neural cell
1
neuroendocrine cell
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
non-neuronal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
peripheral blood stem cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
preadipocyte
1
primordial germ cell
1
proximal tubule cells with injury markers
1
pulmonary interstitial fibroblast
1
regular atrial cardiac myocyte
1
regular cardiac myocyte
1
renal epithelial cell
1
renal intercalated cell
1
renal principal cell
1
respiratory goblet cell
1
retinal bipolar neuron
1
skeletal muscle fibroblast
1
small intestine goblet cell
1
somatic gonadal cell
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
stromal cell of bone marrow
1
sympathetic neuron
1
thyroid follicular cell
1
tracheal epithelial cell
1
trophoblast giant cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
1
See all biosamples
Download