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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
328
candidate regulatory elements
298
gene expression
227
target gene predictions
155
accessible chromatin
122
histone modifications
94
binding sites
81
variant allelic effects
42
differential activity
33
chromatin state
9
eQTL
5
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
455
February, 2021
326
September, 2022
159
May, 2021
121
February, 2024
85
May, 2020
55
March, 2023
53
June, 2020
39
August, 2021
34
May, 2022
29
October, 2022
16
February, 2020
9
August, 2018
9
November, 2022
6
August, 2017
5
March, 2020
1
January, 2022
1
July, 2020
1
June, 2021
1
March, 2024
1
November, 2020
Available data
1021
bed bed3+
299
tsv
108
txt
83
bigWig
27
bed bed9+
16
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
Organism
1361
Homo sapiens
Biosample type
1978
cell line
1913
tissue
1406
primary cell
405
in vitro differentiated cells
4
stem cell
Organ
419
epithelium
171
connective tissue
150
kidney
84
vasculature
83
pancreas
73
skin of body
58
blood vessel
35
musculature of body
35
penis
33
mammary gland
29
extraembryonic component
27
liver
23
brain
20
artery
18
lung
17
heart
16
embryo
15
eye
15
vein
11
bronchus
10
bone element
9
blood
9
bodily fluid
9
bone marrow
8
prostate gland
7
placenta
6
lymphatic vessel
5
esophagus
5
trachea
4
intestine
3
mouth
3
spinal cord
3
uterus
2
stomach
1
adipose tissue
1
adrenal gland
1
gonad
1
limb
1
pericardium
1
thyroid gland
Project
1406
AMP
281
KPMP
56
T1D
19
LungMap
2
community
Genome assembly (visualization)
1394
hg19
GRCh38
assembly!
GRCh38
BIOSAMPLE
TYPE
1406 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
gene expression
target gene predictions
accessible chromatin
histone modifications
binding sites
variant allelic effects
differential activity
chromatin state
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
CD8-positive, alpha-beta T cell
7
3
3
2
30
1
common myeloid progenitor, CD34-positive
27
14
B cell
14
2
10
2
monocyte
15
1
4
2
1
1
2
1
1
CD14-positive monocyte
8
19
CD4-positive, alpha-beta memory T cell
14
9
epithelial cell of proximal tubule
2
16
1
1
1
regulatory T cell
5
7
3
4
1
1
T-helper 1 cell
6
7
3
3
endothelial cell
9
3
1
2
2
1
1
glomerular endothelial cell
2
14
1
1
1
T-helper 17 cell
5
7
3
2
hepatocyte
1
8
2
1
1
1
2
CD8-positive, alpha-beta memory T cell
8
7
endothelial cell of umbilical vein
6
4
1
2
1
1
foreskin fibroblast
6
2
1
2
4
foreskin keratinocyte
11
4
mononuclear cell
7
6
1
natural killer cell
6
2
4
1
1
skeletal muscle myoblast
4
1
2
2
1
2
1
1
trophoblast cell
7
5
1
1
CD4-positive, alpha-beta T cell
8
2
3
T-helper 2 cell
5
3
3
2
fibroblast of lung
6
4
2
1
mammary epithelial cell
3
1
1
3
4
1
osteoblast
2
2
2
2
2
3
pancreatic ductal cell
3
1
2
2
1
1
3
neutrophil
4
3
1
2
1
1
keratinocyte
3
3
2
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
4
1
1
1
1
1
1
1
T cell
4
4
2
bronchial epithelial cell
4
2
1
1
2
glomerular visceral epithelial cell
2
5
1
2
neurosphere
7
3
pancreatic alpha cell
3
1
2
1
3
pancreatic beta cell
3
1
2
1
3
pancreatic delta cell
3
1
2
1
3
fibroblast of dermis
4
4
1
mature neutrophil
1
1
7
pancreatic acinar cell
3
1
1
1
3
dermis blood vessel endothelial cell
6
2
mammary gland epithelial cell
3
3
1
1
epithelial cell of prostate
4
3
fibroblast
1
6
fibroblast of mammary gland
2
1
1
1
2
fibroblast of pulmonary artery
2
1
1
1
2
fibroblast of villous mesenchyme
2
1
1
1
2
kidney interstitial cell
6
1
kidney loop of Henle thin ascending limb epithelial cell
7
kidney tubule cell
3
1
2
1
retinal pigment epithelial cell
2
1
1
1
2
skeletal muscle satellite cell
2
2
1
2
smooth muscle cell
1
2
2
1
1
CD1c-positive myeloid dendritic cell
2
1
1
1
1
T-cell
4
2
alternatively activated macrophage
1
1
4
astrocyte
2
1
2
1
cardiac muscle cell
2
1
1
2
erythroblast
2
2
2
fibroblast of breast
4
2
fibroblast of cardiac tissue
3
3
gamma-delta T cell
4
2
hepatic stellate cell
1
1
1
1
1
1
kidney glomerular epithelial cell
2
1
1
1
1
macrophage
2
1
3
mesenchymal stem cell
1
1
2
1
1
myoepithelial cell of mammary gland
4
2
naive T cell
3
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
1
2
pancreatic stellate cell
2
1
3
peripheral blood mononuclear cell
4
1
1
pulmonary artery endothelial cell
2
1
1
1
1
renal cortical epithelial cell
2
1
1
1
1
skeletal muscle fiber
2
2
2
CD14-positive, CD16-negative classical monocyte
5
central memory CD8-positive, alpha-beta T cell
3
2
choroid plexus epithelial cell
2
1
1
1
effector memory CD8-positive, alpha-beta T cell
3
2
epithelial cell of esophagus
2
1
2
foreskin melanocyte
4
1
inflammatory macrophage
1
1
3
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
4
1
kidney epithelial cell
2
1
1
1
kidney loop of Henle thick ascending limb epithelial cell
5
memory B cell
3
2
mesangial cell
5
pancreatic endothelial cell
1
1
3
skin fibroblast
2
2
1
tracheal epithelial cell
1
2
2
type I muscle cell
1
2
1
1
type II muscle cell
1
2
1
1
T follicular helper cell
2
2
acute myeloid leukemia cell
2
2
adult endothelial progenitor cell
3
1
aortic adventitial fibroblast
1
1
2
astrocyte of the cerebellum
2
1
1
astrocyte of the hippocampus
2
1
1
cardiac fibroblast
3
1
dermis lymphatic vessel endothelial cell
2
2
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
fibroblast of peridontal ligament
2
1
1
glutamatergic neuron
4
iris pigment epithelial cell
2
1
1
kidney connecting tubule epithelial cell
4
leukocyte
2
2
lung microvascular endothelial cell
3
1
mast cell
1
1
1
1
mature natural killer cell
2
2
memory T cell
2
2
memory regulatory T cell
2
2
myofibroblast cell
1
3
naive B cell
1
1
2
nephron progenitor
4
non-pigmented ciliary epithelial cell
2
1
1
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
pancreatic polypeptide-secreting cell
2
1
1
plasma cell
1
1
1
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
skeletal muscle cell
2
1
1
smooth muscle cell of the brain vasculature
2
1
1
vascular associated smooth muscle cell
2
2
Ishikawa
1
1
1
S-shaped body
3
Schwann cell
1
2
Th1 cell
1
1
1
Th17 cell
1
1
1
adipocyte
1
1
1
aortic endothelial cell
2
1
astrocyte of the spinal cord
2
1
bone marrow cell
2
1
brain microvascular endothelial cell
2
1
enterocyte
3
erythroid cell
1
1
1
fibroblast of gingiva
2
1
fibroblast of the aortic adventitia
2
1
fibroblast of the conjunctiva
2
1
kidney capillary endothelial cell
1
1
1
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
meso-epithelial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive regulatory T cell
1
2
neoplastic cell
1
1
1
pancreatic quiescent stellate cell
3
peripheral blood stem cell
1
1
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
stromal cell of bone marrow
2
1
cardiac fibroblast
2
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive helper T cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Kupffer cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
amnion mesenchymal stem cell
1
1
amniotic stem cell
1
1
basal cell
2
brain pericyte
1
1
cardiac muscle myoblast
1
1
chronic lymphocytic leukemia cell
1
1
columnar chondrocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
effector memory CD4-positive, alpha-beta T cell
1
1
endothelial cell of coronary artery
1
1
epidermal melanocyte
1
1
epithelial cell of amnion
1
1
erythroid progenitor cell
1
1
glial cell
1
1
goblet cell
2
head and neck squamous cell carcinoma
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
luminal epithelial cell of mammary gland
1
1
mammary stem cell
1
1
mantle cell lymphoma cell
2
myeloid dendritic cell
1
1
naive B cel
2
neural cell
1
1
neuronal stem cell
1
1
pancreatic endocrine cell
1
1
pericyte cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular cardiac myocyte
1
1
renal principal cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
small cell ovarian carcinoma cell
1
1
smooth muscle cell of the coronary artery
1
1
somatic muscle myotube
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD4-positive, alpha-beta T cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cholangiocyte
1
colorectal cancer
1
cortical cell of adrenal gland
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
epithelial cell of distal tubule
1
erythroid lineage cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gabaergic neuron
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature eosinophil
1
megakaryocyte
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
mesothelial cell
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
naive t cell
1
neural progenitor cell
1
neuron
1
neutrophil progenitor cell
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic A cell
1
pancreatic cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
pericardium fibroblast
1
peripheral blood
1
plasmacytoid dendritic cell
1
progenitor cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
seminoma cell
1
somatic gonadal cell
1
sperm
1
thyroid follicular cell
1
type B pancreatic cell
1
type II pneumocyte
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
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